This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LW5M.1

USA/UNMC0019/2014-08-15
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2014-08-15
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Red Willow)
Isolate name
UNMC0019

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OZ309983.1
Submitting group
Date submitted
2026-07-29 14:30:19 UTC
Date released
2026-07-29 14:53:30 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
68
Length
10174 (92.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:V88M
  • NS2A:M90V
  • NS2B:A103V
  • NS3:I213M
  • NS3:T249P
  • NS3:L336S
  • NS3:I356T
  • NS4A:K11R
  • NS4A:V85A
  • NS4B:F17L
  • NS5:K177R
  • NS5:K280E
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T609C
  • A630G
  • C660T
  • G1116A
  • T1442C
  • C1465T
  • G1524A
  • T1584C
  • C1707T
  • A2217G
  • C2466T
  • T2619C
  • C2784G
  • T2874C
  • T2880C
  • G2901A
  • C3249T
  • G3264A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:V88M
  • NS2A:M90V

NS3

  • NS3:I213M
  • NS3:L336S

NS4A

  • NS4A:K11R

NS4B

  • NS4B:F17L

NS5

  • NS5:K280E

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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