This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LW4P.1

Display Name: USA/LOC_000LW4P.1/2014-10-28
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

Sample details

Collection date
2014-10-28
Collection date (lower bound)
2014-10-28
Collection date (upper bound)
2014-10-28
Earliest release date
2019-01-20
Collection country
USA
Collection subdivision level 1
San_Diego,California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-17 12:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Accipitridae

Alignment and QC metrics

Length
10302
Total SNPs
69
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
MH507663.1
Submitting group
Date submitted
2025-12-17 12:06:23 UTC
Date released
2025-12-17 12:17:47 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A288G
  • A555G
  • A630G
  • C660T
  • A1320G
  • T1407C
  • C1434T
  • T1442C
  • C1465T
  • G1806A
  • C1974T
  • C2466T
  • G2886A
  • C3085T
  • T3399C
  • C3414T
  • T3684C
  • G3765A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS1

  • NS1:L206F

    • NS2A

  • NS2A:M80I

    • NS3

  • NS3:N253T
  • NS3:S448T

    • NS4A

  • NS4A:A85T
  • NS4A:P100S

    • NS4B

  • NS4B:V23A
  • NS4B:T241A

    • NS5

  • NS5:K314R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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