This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LW4P.1

Russia/LOC_000LW4P.1/2009
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2009
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
4616-STV/HU-2009

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-29 06:05insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
KR821472.1.M/KR815204.1.S
Submitting group
Date submitted
2026-04-29 06:05:23 UTC
Date released
2026-04-29 06:10:00 UTC

Lineage

Segment S Lineage
V

Files

Annotations

Alignment and QC

Total SNPs M
79
Length M
435 (8.11%)
Total SNPs S
86
Length S
538 (32.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • C4644T
  • T4649C
  • C4652T
  • T4661G
  • A4664G
  • A4667G
  • C4671T
  • T4676C
  • A4694T
  • C4697T
  • T4711C
  • A4730G
  • A4736G
  • T4742A
  • T4743C
  • G4745A
  • C4748T
  • A4751G

S

  • C115T
  • A121G
  • G134A
  • C139T
  • C142T
  • T157C
  • C166T
  • G171A
  • T175A
  • C178A
  • T182C
  • C187T
  • G189A
  • T199C
  • G202A
  • C217T
  • C244T
  • T250G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:H1527Y
  • GPC:E1534D
  • GPC:V1540A
  • GPC:S1564D
  • GPC:S1589G
  • GPC:G1590S
  • GPC:I1591V
  • GPC:N1594S
  • GPC:V1595F
  • GPC:M1597V
  • GPC:F1600L
  • GPC:I1607V
  • GPC:I1610V
  • GPC:R1618K
  • GPC:K1652R
  • GPC:N1655S
  • GPC:K1661R

NP

  • NP:V27M
  • NP:S39N
  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
Deletions
N/A
Insertions
N/A

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