This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LW3R.1

USA/LOC_000LW3R.1/2006-01-01
R. M. Newman, M. C. Zody, M. Henn, L. Kramer, A. Ciota, D. Young, T. W. Poon, P. Charlebois, B. Weiner, X. Yang, L. Larson, M. E. Piper, M. Fitzgerald, A. Lui, S. Young, S. Gargeya, J. Levin, C. Malboeuf, J. Qu, A. M. Berlin, S. B. Chapman, C. Murphy, J. Wortman, C. Nusbaum & B. Birren

Broad Institute of MIT & Harvard

Sample details

Collection date
2006
Earliest release date
2014-02-10
Sampling location
USA
Isolate name
WNV-1/US/BID-V4895/2006

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-02-10
NCBI update date
2014-02-10
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KJ145823.1
Submitting group
Date submitted
2026-09-09 16:34:08 UTC
Date released
2026-09-09 16:47:17 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
43
Length
10366 (94%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:I597T
  • NS4A:V85A
  • NS4B:K24R
  • NS4B:T241I
  • NS5:K177R
  • capsid:M21T
  • env:K93R
  • env:T126I
  • env:I159A
  • env:A487V
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T158C
  • T606C
  • A630G
  • T648C
  • C660T
  • C687T
  • C732T
  • T1368C
  • T1442C
  • C1465T
  • A2253T
  • C2316T
  • C2426T
  • C2466T
  • A3126G
  • C3159T
  • T3234C
  • T3732C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:I597T

NS4B

  • NS4B:K24R
  • NS4B:T241I

capsid

  • capsid:M21T

env

  • env:V159A
  • env:L167F
  • env:A487V
Deletions
N/A
Insertions
N/A

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