This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVZZ.1

Display Name: USA/LOC_000LVZZ.1/2023-08-07
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-08-07
Collection date (lower bound)
2023-08-07
Collection date (upper bound)
2023-08-07
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Scotts Bluff
Isolate name
UNMC0548

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-27 14:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex

Alignment and QC metrics

Length
10260
Total SNPs
105
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ310024.1
Submitting group
Date submitted
2025-10-27 14:17:35 UTC
Date released
2025-10-27 14:36:24 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T629C
  • A630G
  • C663T
  • T891C
  • C1314T
  • C1329T
  • T1407C
  • T1442C
  • C1465T
  • G1662A
  • T1692C
  • G1713A
  • C1750T
  • C1878T
  • C2109T
  • C2304T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:V9M

    • NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:V112I
  • NS4B:I240M

    • NS5

  • NS5:W249R
  • NS5:R422K

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V55A
    • Deletions
    None
    Insertions
    None

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