This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVRF.1

Display Name: Japan/LOC_000LVRF.1/2008-09-25
K. Akiyoshi, T. Suga & A. Mori

Sample details

Collection date
2008-09-25
Collection date (lower bound)
2008-09-25
Collection date (upper bound)
2008-09-25
Earliest release date
2014-05-16
Collection country
Japan
Collection subdivision level 1
Kobe
Isolate name
080326/CA16/kobe/2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-07 17:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Department of Infectious diseases; 4-6 Minatojimanakamachi, Kobe, Hyogo 650-0046

INSDC

NCBI release date
2014-05-16
NCBI update date
2014-05-16
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
776
Total SNPs
168
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
10.47%
Total stop codons
0

Submission details

Submission ID
AB935236.1
Submitting group
Date submitted
2026-01-07 17:00:16 UTC
Date released
2026-01-07 17:02:17 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2592G
  • A2595G
  • C2601G
  • C2604G
  • C2607G
  • T2610G
  • A2619T
  • C2620A
  • A2621G
  • G2622T
  • G2626A
  • A2637T
  • C2643T
  • C2644A
  • G2646A
  • T2661C
  • T2670A
  • A2673G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions

    2A

  • 2A:Q5H

    • VP1

  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
  • VP1:L183M
  • VP1:A213E
  • VP1:P215L
  • VP1:S217A
  • VP1:A220L
  • VP1:T275A
    • Deletions
    None
    Insertions
    None

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