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LOC_000LVMP.1
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Download FASTA
Download metadata TSV
United_Kingdom/LOC_000LVMP.1/2018-08-20
M. Majumdar &
J. Martin
National Institute for Biological Standards and Control, Virology
Sample details
Collection date
2018-08-20
Earliest release date
2021-02-10
Sampling location
United Kingdom
Isolate name
CLI-B3-51-CV-A16
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-29 16:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-02-10
NCBI update date
2021-02-10
INSDC accession
MT641429.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MT641429.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-29 16:00:06 UTC
Date released
2026-05-29 16:07:57 UTC
Clade
Clade CV-A16
B1c
Genotype
Genotype
CV-A16
Alignment and QC
Total SNPs
836
Total inserted nucs
1
Total deleted nucs
5
Length
3871 (52.3%)
Nucleotide mutations
Mutations called relative to the
U05876.1
reference
Substitutions
T
581
C
C
586
T
G
612
A
A
613
G
G
649
A
T
650
A
G
651
C
A
665
G
A
673
G
T
676
C
G
682
A
T
685
C
A
686
G
A
688
C
A
691
T
C
694
T
A
697
C
C
700
A
Show more
Deletions
583, 704-707
Insertions
ins_694:G
Amino acid substitutions
Substitutions called relative to the
U05876.1
reference
Substitutions
2A
2A:
D
57
N
2A:
R
68
K
2A:
S
77
T
2A:
V
121
I
2B
2B:
T
15
M
2B:
A
27
V
2B:
I
47
V
2B:
I
57
V
2B:
A
96
V
2C
2C:
N
23
S
2C:
I
37
V
2C:
G
78
S
VP1
VP1:
G
3
P
VP1:
A
11
T
VP1:
T
13
N
VP1:
S
14
N
VP1:
R
15
Q
VP1:
G
17
N
VP1:
A
19
S
VP1:
S
22
A
VP1:
E
26
L
VP1:
N
33
E
VP1:
E
36
S
VP1:
L
43
V
VP1:
Q
59
S
VP1:
E
61
K
VP1:
T
79
A
VP1:
M
119
L
VP1:
A
139
V
VP1:
I
179
V
Show more
VP2
VP2:
I
32
V
VP2:
K
43
P
VP2:
A
45
T
VP2:
I
126
V
VP2:
D
139
T
VP2:
V
149
A
VP2:
N
162
H
VP2:
V
170
I
VP2:
I
215
L
VP2:
V
217
I
VP2:
A
226
T
VP2:
I
252
V
VP3
VP3:
A
33
P
VP3:
R
41
H
VP3:
Q
59
K
VP3:
S
60
T
VP3:
V
85
A
VP3:
N
93
D
VP3:
G
141
N
VP3:
L
147
I
VP3:
I
169
V
VP3:
K
182
R
VP3:
D
183
A
VP3:
T
193
I
VP3:
S
238
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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