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LOC_000LVHX.1
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Download FASTA
Download metadata TSV
USA/LOC_000LVHX.1/2014-10-28
N. Grubaugh,
S. Grewal,
N. L. Matteson,
K. Gangavarapu,
N. Gurfield &
K. Andersen
The Scripps Research Institute, Department of Immunology and Microbiology
Sample details
Collection date
2014-10-28
Earliest release date
2019-01-20
Sampling location
USA (San_Diego,California)
Isolate name
WNV/bird/San_Diego_CA_USA/2014-10-28/W068
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-09 12:53
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
MH507663.1
Bioproject accession
PRJNA472981
Host
Host
Accipitridae
Submission details
Submission ID
MH507663.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVHX.1.embl
Alignment and QC
Total SNPs
69
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
2K:
V
9
M
2K:
L
15
M
NS1:
L
206
F
NS2A:
M
80
I
NS2B:
A
103
V
NS3:
T
249
P
NS3:
N
253
T
NS3:
I
356
T
NS3:
S
448
T
NS4A:
V
85
T
NS4A:
P
100
S
NS4B:
V
23
A
NS4B:
T
241
A
NS5:
K
177
R
NS5:
K
314
R
env:
K
93
R
env:
T
126
I
env:
I
159
A
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
A
288
G
A
555
G
A
630
G
C
660
T
A
1320
G
T
1407
C
C
1434
T
T
1442
C
C
1465
T
G
1806
A
C
1974
T
C
2466
T
G
2886
A
C
3085
T
T
3399
C
C
3414
T
T
3684
C
G
3765
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
V
9
M
NS1
NS1:
L
206
F
NS2A
NS2A:
M
80
I
NS3
NS3:
N
253
T
NS3:
S
448
T
NS4A
NS4A:
A
85
T
NS4A:
P
100
S
NS4B
NS4B:
V
23
A
NS4B:
T
241
A
NS5
NS5:
K
314
R
env
env:
V
159
A
env:
L
167
F
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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