This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVHX.1

Display Name: USA/LOC_000LVHX.1/2023-09-13
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2023-09-13
Collection date (lower bound)
2023-09-13
Collection date (upper bound)
2023-09-13
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Adams
Isolate name
UNMC0729

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:34insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10169
Total SNPs
105
Total inserted nucs
0
Total deleted nucs
1
Total ambiguous nucs
0
Total unknown nucs
341
Total frame shifts
1
Frame shifts
NS5:206-905(nt:8294-10395)
Completeness
89.12%
Total stop codons
0

Submission details

Submission ID
OZ309994.1
Submitting group
Date submitted
2025-11-28 16:34:15 UTC
Date released
2025-11-28 16:54:17 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C282T
  • A288G
  • C340T
  • G430A
  • C435T
  • C522T
  • T528C
  • C624T
  • A630G
  • G741A
  • C816T
  • T891C
  • T928C
  • T1149C
  • T1368C
  • T1442C
  • C1465T
  • T1563C
    • Deletions
    8293
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:T108M

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • capsid

  • capsid:A112T

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:F155L
    • Deletions
    NS5:205
    Insertions
    None

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