This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVHX.1

USA/UNMC0539/2023-08-08
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

University of Nebraska Medical Center, Omaha, Nebraska

Sample details

Collection date
2023-08-08
Earliest release date
2025-09-03
Sampling location
USA (Nebraska; Scotts Bluff)
Isolate name
UNMC0539

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2025-09-03
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ310150.1
Submitting group
Date submitted
2026-03-21 21:23:31 UTC
Date released
2026-03-21 21:47:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
111
Length
10281 (93.2%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:H50Y
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:K14R
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4A:V89A
  • NS4B:S14I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:M39L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • T348C
  • T513C
  • C519T
  • A580T
  • T609C
  • A630G
  • C783T
  • C807T
  • C990T
  • G1365A
  • A1401G
  • T1442C
  • C1465T
  • A1674G
  • T1692C
  • T1872C
  • C1878T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:H50Y

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:K14R
  • NS3:S334T

NS4A

  • NS4A:V89A

NS4B

  • NS4B:S14I

env

  • env:V159A
  • env:L167F

prM

  • prM:M39L
Deletions
N/A
Insertions
N/A

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