This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVHX.1

USA/LOC_000LVHX.1/2014-10-03
N. Grubaugh, S. Grewal, N. L. Matteson, K. Gangavarapu, N. Gurfield & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2014-10-03
Earliest release date
2019-01-20
Sampling location
USA (Santee,California)
Isolate name
WNV/bird/Santee_CA_USA/2014-10-03/W066

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-15 20:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH507661.1
Submitting group
Date submitted
2026-03-15 20:25:42 UTC
Date released
2026-03-15 20:57:28 UTC

Lineage

Lineage
1A

Files

annotations

Alignment and QC

Total SNPs
81
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:Q349H
  • NS2A:I37V
  • NS2A:I39L
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS4A:K124R
  • NS5:K177R
  • NS5:N306S
  • NS5:K314R
  • NS5:A860T
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C660T
  • T850C
  • G1098A
  • G1185A
  • A1320G
  • T1442C
  • C1465T
  • C1470T
  • G1485A
  • C1773T
  • C1974T
  • C2466T
  • A2847G
  • T3093C
  • T3399C
  • A3516C
  • A3634G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:Q349H

NS2A

  • NS2A:I37V
  • NS2A:I39L

NS4A

  • NS4A:A85T
  • NS4A:K124R

NS5

  • NS5:N306S
  • NS5:K314R
  • NS5:A860T

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue