This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVF2.1

Display Name: USA/LOC_000LVF2.1/2020-09-25
S. Jr. Freed, S. Chandler, S. Uhm, D. Gurung, A. Butz, K. Herzog & J. R. Fauver

Sample details

Collection date
2020-09-25
Collection date (lower bound)
2020-09-25
Collection date (upper bound)
2020-09-25
Earliest release date
2025-09-02
Collection country
USA
Collection subdivision level 1
Nebraska; Sarpy
Isolate name
UNMC0635

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Nebraska Medical Center, Omaha, Nebraska

INSDC

NCBI release date
2025-09-02
NCBI update date
2025-09-04
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10260
Total SNPs
108
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.03%
Total stop codons
0

Submission details

Submission ID
OZ309964.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:42:59 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T234A
  • C573T
  • A630G
  • C687T
  • G696A
  • C758T
  • G786A
  • A939G
  • T1357C
  • A1401G
  • T1442C
  • C1465T
  • T1965C
  • A2097C
  • C2371T
  • C2466T
  • T2475C
  • T2607C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:F94V
  • NS2A:L95F
  • NS2A:H119Y

    • NS3

  • NS3:S334T
  • NS3:F486L

    • NS4B

  • NS4B:S14I
  • NS4B:V23A
  • NS4B:M29V

    • NS5

  • NS5:M19L
  • NS5:T50N

    • capsid

  • capsid:F46L

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:T98I
    • Deletions
    None
    Insertions
    None

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