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LOC_000LVF2.1
Download
Download FASTA
Download metadata TSV
USA/UNMC0635/2020-09-25
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2020-09-25
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Sarpy)
Isolate name
UNMC0635
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-05 15:31
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
OZ309964.1
BioProject accession
PRJEB96341
BioSample accession
SAMEA119799517
Host
Host
common house mosquito; northern house mosquito (Culex pipiens)
Submission details
Submission ID
OZ309964.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-05 15:31:35 UTC
Date released
2026-06-05 15:50:39 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVF2.1.embl
Alignment and QC
Total SNPs
108
Length
10260 (93%)
Amino Acid Mutations from founder clade
2K:
L
15
M
NS2A:
T
52
I
NS2A:
F
94
V
NS2A:
L
95
F
NS2A:
H
119
Y
NS2B:
A
103
V
NS3:
T
249
P
NS3:
S
334
T
NS3:
I
356
T
NS3:
F
486
L
NS4A:
V
85
A
NS4B:
S
14
I
NS4B:
V
23
A
NS4B:
M
29
V
NS5:
M
19
L
NS5:
T
50
N
NS5:
K
177
R
capsid:
F
46
L
Show more
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
T
234
A
C
573
T
A
630
G
C
687
T
G
696
A
C
758
T
G
786
A
A
939
G
T
1357
C
A
1401
G
T
1442
C
C
1465
T
T
1965
C
A
2097
C
C
2371
T
C
2466
T
T
2475
C
T
2607
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
NS2A
NS2A:
T
52
I
NS2A:
F
94
V
NS2A:
L
95
F
NS2A:
H
119
Y
NS3
NS3:
S
334
T
NS3:
F
486
L
NS4B
NS4B:
S
14
I
NS4B:
V
23
A
NS4B:
M
29
V
NS5
NS5:
M
19
L
NS5:
T
50
N
capsid
capsid:
F
46
L
env
env:
V
159
A
env:
L
167
F
prM
prM:
T
98
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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