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LOC_000LVBA.1
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Download FASTA
Download metadata TSV
USA/UNMC0307/2017-08-09
S. Jr. Freed,
S. Chandler,
S. Uhm,
D. Gurung,
A. Butz,
K. Herzog &
J. R. Fauver
University of Nebraska Medical Center, Omaha, Nebraska
Sample details
Collection date
2017-08-09
Earliest release date
2025-09-02
Sampling location
USA (Nebraska; Scottsbluff)
Isolate name
UNMC0307
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-06 10:58
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-09-02
NCBI update date
2025-10-21
INSDC accession
OZ309756.1
BioProject accession
PRJEB96341
BioSample accession
SAMEA119799339
Host
Host
mosquitos (Culex tarsalis)
Submission details
Submission ID
OZ309756.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-06 10:58:20 UTC
Date released
2026-06-06 11:19:25 UTC
Lineage
Lineage
1A
Files
Annotations
LOC_000LVBA.1.embl
Alignment and QC
Total SNPs
83
Length
10260 (93%)
Amino Acid Mutations from founder clade
2K:
V
9
M
2K:
L
15
M
NS2A:
R
98
K
NS2A:
R
188
K
NS2B:
A
103
I
NS3:
T
249
P
NS3:
I
356
T
NS3:
I
462
V
NS4A:
V
85
A
NS4B:
L
59
M
NS4B:
I
240
V
NS4B:
E
249
G
NS5:
K
177
R
NS5:
Y
374
H
capsid:
I
118
V
env:
K
93
R
env:
T
126
I
env:
I
159
A
prM:
M
150
T
Variant
True
Nucleotide mutations
Mutations called relative to the
NC_009942.1
reference
Substitutions
C
340
T
C
435
T
A
448
G
A
630
G
T
914
C
C
1047
T
C
1329
T
T
1442
C
C
1465
T
G
1482
T
G
1662
A
C
1750
T
T
1755
C
C
2109
T
G
2214
A
C
2304
T
C
2466
T
G
3048
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_009942.1
reference
Substitutions
2K
2K:
V
9
M
NS2A
NS2A:
R
98
K
NS2A:
R
188
K
NS2B
NS2B:
V
103
I
NS3
NS3:
I
462
V
NS4B
NS4B:
L
59
M
NS4B:
I
240
V
NS4B:
E
249
G
NS5
NS5:
Y
374
H
capsid
capsid:
I
118
V
env
env:
V
159
A
env:
L
167
F
prM
prM:
M
150
T
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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