This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LVBA.1

Senegal/AnD95153/1993-01-21
G. Fall, M. Diallo, C. Loucoubar, O. Faye, A. A. Sall, F. Gamou, D. Mawlouth, L. Cheikh, F. Ousmane & S. A. Amadou

Institut Pasteur Dakar, Unite des Arbovirus et Virus de Fievres Hemorragiques

Sample details

Collection date
1993-01-21
Earliest release date
2014-04-08
Sampling location
Senegal
Isolate name
AnD95153

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2014-04-08
NCBI update date
2014-04-08
INSDC accession

Host

Host

Submission details

Submission ID
KJ131503.1
Submitting group
Date submitted
2026-09-09 16:34:08 UTC
Date released
2026-09-09 16:47:17 UTC

Lineage

Lineage
7

Files

Annotations

Alignment and QC

Total SNPs
368
Total inserted nucs
7
Total deleted nucs
7
Total frame shifts
1
Frame shifts
env:307-310(nt:1884-1895)
Length
1503 (13.6%)
Amino Acid Mutations from founder clade
  • env:T120A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T978A
  • A993G
  • G1011C
  • T1014C
  • A1017G
  • A1020T
  • A1023T
  • G1029T
  • T1032C
  • T1033A
  • G1035T
  • T1038C
  • C1041T
  • C1047A
  • C1053T
  • G1057A
  • G1059C
  • T1062A
Deletions
1896, 2074-2079
Insertions
ins_1883:G, ins_2051:GGCTTC

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:L23I
  • env:V31I
  • env:V43I
  • env:M46L
  • env:N47S
  • env:E49S
  • env:A51T
  • env:T64A
  • env:V65I
  • env:P88S
  • env:F90Y
  • env:R93K
  • env:K124Q
  • env:I126V
  • env:R128K
  • env:T129I
  • env:L131Q
  • env:A140S
Deletions
N/A
Insertions
N/A

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