This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LSZ2.1

Display Name: Spain/LOC_000LSZ2.1/2021-09-03
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Sample details

Collection date
2021-09-03
Collection date (lower bound)
2021-09-03
Collection date (upper bound)
2021-09-03
Earliest release date
2025-08-01
Collection country
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:52insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

INSDC

NCBI release date
2025-08-01
NCBI update date
2025-10-21
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
10847
Total SNPs
435
Total inserted nucs
1
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1146
Total frame shifts
0
Completeness
87.95%
Total stop codons
0

Submission details

Submission ID
OZ293646.1
Submitting group
Date submitted
2025-12-24 08:52:14 UTC
Date released
2025-12-24 09:10:26 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
  • G786A
  • T826C
  • T850C
  • C858T
  • C870T
    • Deletions
    None
    Insertions
    ins_10492:A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S
  • NS1:K170R

    • NS2A

  • NS2A:G211R

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:A177V
  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:R422K
  • NS5:E638K

    • capsid

  • capsid:A52T

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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