This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNH4.1

Display Name: USA/LOC_000LNH4.1/2017-08-02
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2017-08-02
Collection date (lower bound)
2017-08-02
Collection date (upper bound)
2017-08-02
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
RE35L-8-2-Ocd

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-16 14:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Ochlerotatus canadensis

Alignment and QC metrics

Length
10188
Total SNPs
41
Total inserted nucs
0
Total deleted nucs
2
Total ambiguous nucs
0
Total unknown nucs
4240
Total frame shifts
0
Completeness
53.95%
Total stop codons
0

Submission details

Submission ID
OZ201785.1
Submitting group
Date submitted
2025-10-16 14:19:38 UTC
Date released
2025-10-16 14:37:34 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • C2109T
  • T3069C
  • A4294G
  • C4527T
  • T4530C
  • C4980T
  • C5457T
  • C5553T
  • C5889T
  • G6063T
  • C6093T
  • C6138T
  • A6144C
  • T6165C
  • T6312C
  • T6405C
  • C6426T
    • Deletions
    10470, 10471
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2B

  • NS2B:I26V

    • NS3

  • NS3:Q511H

    • NS4B

  • NS4B:I21V
    • Deletions
    None
    Insertions
    None

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