This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LNG7.1

USA/LOC_000LNG7.1/2018-08-29
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-29
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
MC80G-8-29-Cxp-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-19 23:33insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201710.1
Submitting group
Date submitted
2026-02-19 23:33:38 UTC
Date released
2026-02-19 23:59:33 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Total ambiguous nucs
4
Length
10917 (98.9%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C129T
  • C340T
  • C393T
  • C435T
  • A630G
  • T795C
  • T1167C
  • T1442C
  • C1465T
  • C1467T
  • G1662A
  • C1750T
  • C1929T
  • C2109T
  • C2304T
  • C2466T
  • A3175G
  • C3501T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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