This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LN21.1

USA/AVA1504079/2015-07-21
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

UT Southwestern Medical Center, Department of Immunology

Sample details

Collection date
2015-07-21
Earliest release date
2018-12-31
Sampling location
USA (Dallas Co. TX)
Isolate name
AVA1504079

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host

Submission details

Submission ID
MF175850.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
35
Total ambiguous nucs
67
Length
11029 (99.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:A860V
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • C6138T
  • A6204G
  • T6405C
  • C6426T
  • C6783T
  • C6996T
  • C7344T
  • T7938C
  • T8235C
  • T8340C
  • A8454T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:A860V

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue