LOC_000LMY9.1

USA/LOC_000LMY9.1/2003-01-01

P. M. Armstrong, C. R. Vossbrinck, T. G. Andreadis, J. F. Anderson, K. N. Pesko, R. M. Newman, N. J. Lennon, B. W. Birren, G. D. Ebel, M. R. Henn, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date

2003

Earliest release date

2010-07-28

Sampling location

USA (Connecticut)

Isolate name

WNV-1/US/BID-V4614/2003

Data use terms

Changed	User	Data use terms
2026-03-26 20:30	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2010-07-28

NCBI update date

2011-08-08

INSDC accession

HM488232.1

BioProject accession

PRJNA31237

Host

Culiseta melanura

Submission details

Submission ID

HM488232.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-03-26 20:29:54 UTC

Date released

2026-03-26 20:46:19 UTC

Lineage

Files

Annotations

LOC_000LMY9.1.embl

Alignment and QC

Total SNPs

Total deleted nucs

196

Length

10737 (99.1%)

Amino Acid Mutations from founder clade

2K:V9M
2K:L15M
NS2A:M80V
NS2B:A103V
NS3:T249P
NS3:I356T
NS4A:V85A
NS5:I162M
NS5:K177R
NS5:R546S
env:K93R
env:T126I
env:I159A

Variant

False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

A630G
T1442C
C1465T
C2466T
G2829A
G3210A
T3675C
A3763G
C4107T
A4146G
C4803T
G5280A
C6138T
T6405C
C6426T
G6871A
C6996T
T7938C

Deletions

10653-10655, 10662-10709, 10714, 10726-10735, 10739-10763, 10769-10773, 10786-10794, 10802-10812, 10818, 10819, 10826-10854, 10863-10915

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference