This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMRP.1

Indonesia/LOC_000LMRP.1/2016-01
A. Wiyatno, E. Hartoyo, C. N. Ma'roef, K. S. Myint, U. Antonjaya & D. Safari

Eijkman Institute for Molecular Biology, Emerging Virus Research Unit

Sample details

Collection date
2016-01
Earliest release date
2017-10-21
Sampling location
Indonesia
Isolate name
EV71_Indonesia_S6_2016

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2017-10-21
NCBI update date
2017-10-21
INSDC accession

Host

Host

Submission details

Submission ID
KY041863.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
163
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions
  • G2441A
  • C2444A
  • T2480C
  • A2491G
  • C2495A
  • C2503A
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513G
  • C2525A
  • C2527A
  • G2529A
  • C2534A
  • A2537G
  • T2546C
  • T2549C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:D2E
  • VP1:K18R
  • VP1:P22Q
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
Deletions
N/A
Insertions
N/A

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