This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMRP.1

Display Name: USA/LOC_000LMRP.1/2017-08-02
Feriancek, N. M.; Breban, M. I.; Bourgikos, E.; Bransfield, A.; Armstrong, P. M.; Vogels, C. B.; Grubaugh, N. D.

Submission details

Submission ID
OZ201785.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:43:09 UTC
Date released
2024-12-23 19:51:20 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-23 19:43insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354355
INSDC accession
OZ201785.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment states and QC metrics

Completeness
53.95%
Length
11027
Total ambiguous nucs
0
Total deleted nucs
2
Total frame shifts
0
Total inserted nucs
0
Total SNPs
41
Total stop codons
0
Total unknown nucs
5079

Sample details

Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2017-08-02
Collection date (lower bound)
2017-08-02
Collection date (upper bound)
2017-08-02
Isolate name
RE35L-8-2-Ocd

Host

Host name scientific
Ochlerotatus canadensis
Host taxon id
228917

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A630G
  • C2109T
  • T3069C
  • A4294G
  • C4527T
  • T4530C
  • C4980T
  • C5457T
  • C5553T
  • C5889T
  • G6063T
  • C6093T
  • C6138T
  • A6144C
  • T6165C
  • T6312C
  • T6405C
  • C6426T
    • Deletions
    10470, 10471
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS2B

  • NS2B:I26V

    • NS3

  • NS3:Q511H

    • NS4B

  • NS4B:I21V
    • Deletions
    None
    Insertions
    None