This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMEC.1

USA/AVA1506913/2015-09-22
C. Aroh, M. D'Anton, C. Liang, P. Raj, B. Wakeland, N. Yan & E. Wakeland

UT Southwestern Medical Center, Department of Immunology

Sample details

Collection date
2015-09-22
Earliest release date
2018-12-31
Sampling location
USA (Denton Co. TX)
Isolate name
AVA1506913

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-12-31
NCBI update date
2018-12-31
INSDC accession

Host

Host

Submission details

Submission ID
MF175831.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:06:01 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Total inserted nucs
3
Total ambiguous nucs
9
Total frame shifts
2
Frame shifts
prM:98-167(nt:757-966),NS3:570-619(nt:6319-6468)
Length
11032 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:A103V
  • NS3:F46L
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • env:T126V
  • env:I159A
  • prM:D40N
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • G583A
  • A630G
  • C687T
  • A1342G
  • T1442C
  • C1465T
  • C1467T
  • C1620T
  • G1662A
  • C1750T
  • C2109T
  • C2274T
  • C2304T
  • G2457T
  • C2466T
  • G2505A
Deletions
N/A
Insertions

ins_756:C, ins_762:A, ins_6318:C

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS3

  • NS3:F46L

NS4B

  • NS4B:I240M

env

  • env:I126V
  • env:V159A
  • env:L167F

prM

  • prM:D40N
Deletions
N/A
Insertions
N/A

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