This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LMEC.1

USA/LOC_000LMEC.1/2018-07-24
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-07-24
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
ST64L-7-24-Cxs

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-02 18:04insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host

Submission details

Submission ID
OZ201772.1
Submitting group
Date submitted
2026-03-02 18:03:54 UTC
Date released
2026-03-02 18:21:03 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
95
Total deleted nucs
2
Total ambiguous nucs
5
Length
10915 (98.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:R188K
  • NS2B:I26V
  • NS2B:A103V
  • NS3:E101V
  • NS3:T249P
  • NS3:I356T
  • NS3:I597T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:A860T
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T367C
  • C435T
  • A630G
  • C972T
  • A981C
  • T1143C
  • T1150C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C1911T
  • C2109T
  • C2304T
  • G2403A
  • C2466T
  • C2472T
Deletions

10470, 10471
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:R188K

NS2B

  • NS2B:I26V

NS3

  • NS3:E101V
  • NS3:I597T

NS4B

  • NS4B:I240M

NS5

  • NS5:A860T

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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