This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LM6U.1

USA/E44L-8-22-Cxp/2018-08-22
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2018-08-22
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
E44L-8-22-Cxp

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201893.1
Submitting group
Date submitted
2026-08-26 11:01:21 UTC
Date released
2026-08-26 11:23:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
102
Total unknown nucs
1127
Length
10917 (88.8%)
Amino Acid Mutations from founder clade
  • NS1:D208E
  • NS1:D326G
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4B:S14I
  • NS5:D707N
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T169C
  • C445T
  • A459G
  • A630G
  • C1215T
  • T1368C
  • A1401G
  • T1442C
  • C1465T
  • C1875T
  • T1965C
  • C1986T
  • T2052A
  • A2097C
  • C2127T
  • C2371T
  • T2394C
  • A2436G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:D208E
  • NS1:D326G

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

NS5

  • NS5:D707N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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