This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LFAS.1

Display Name: USA/LOC_000LFAS.1/2019-08-22
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2019-08-22
Collection date (lower bound)
2019-08-22
Collection date (upper bound)
2019-08-22
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SM62G-8-22-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-18 17:47insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10917
Total SNPs
29
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
112
Total unknown nucs
0
Total frame shifts
0
Completeness
97.97%
Total stop codons
0

Submission details

Submission ID
OZ201528.1
Submitting group
Date submitted
2025-11-18 17:47:02 UTC
Date released
2025-11-18 18:07:17 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C1560T
  • C2466T
  • T3138C
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • C5448T
  • C6138T
  • A6204G
  • T6405C
  • C6426T
  • C6996T
  • C7068T
  • T7938C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:S262N

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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