This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAGK.1

USA/NEB84G-9-22-Cxp/2016-09-22
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Yale School of Public Health, New Haven, CT

Sample details

Collection date
2016-09-22
Earliest release date
2024-11-07
Sampling location
USA (Connecticut)
Isolate name
NEB84G-9-22-Cxp

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-12 14:29insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
BioProject accession
BioSample accession

Host

Host

Submission details

Submission ID
OZ201393.1
Submitting group
Date submitted
2026-05-12 14:28:59 UTC
Date released
2026-05-12 15:24:47 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
80
Length
10917 (99%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T309I
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • NS5:K314R
  • capsid:A112V
  • env:K93R
  • env:T126I
  • env:I159A
  • env:Q391L
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C431T
  • C435T
  • A630G
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2109T
  • A2138T
  • C2304T
  • A2352G
  • C2371T
  • C2466T
  • C3395T
  • C3501T
  • T3528C
  • T3867C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T309I

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

NS5

  • NS5:K314R

capsid

  • capsid:A112V

env

  • env:V159A
  • env:L167F
  • env:Q391L
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue