This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAGK.1

USA/M10-17/2010-09-24
T. L. Goldberg, S. D. Sibley & C. W. Nelson

University of Wisconsin-Madison, Pathobiological Sciences

Sample details

Collection date
2010-09-24
Earliest release date
2019-02-17
Sampling location
USA (Illinois, West Chicago suburbs)
Isolate name
M10-17

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 13:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-02-17
NCBI update date
2019-02-17
INSDC accession

Host

Host

Submission details

Submission ID
KY782123.1
Submitting group
Date submitted
2026-03-10 13:53:06 UTC
Date released
2026-03-10 14:12:07 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
46
Length
10986 (99.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:M177I
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:N347S
  • prM:F155L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T513A
  • A630G
  • C816T
  • T930G
  • T1442C
  • C1465T
  • A1590G
  • C1629T
  • A2006G
  • C2466T
  • G2544T
  • C3159T
  • C4047T
  • C4054T
  • C4107T
  • A4146G
  • T4179C
  • G4545A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:M177I

env

  • env:V159A
  • env:L167F
  • env:N347S

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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