This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAGK.1

Display Name: USA/LOC_000LAGK.1/2018-08-14
Feriancek, N. M.; Breban, M. I.; Bourgikos, E.; Bransfield, A.; Armstrong, P. M.; Vogels, C. B.; Grubaugh, N. D.

Submission details

Submission ID
OZ201423.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:43:09 UTC
Date released
2024-12-23 19:50:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-23 19:43insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

Bioproject accession
PRJEB80643
Biosample accession
SAMEA116354579
INSDC accession
OZ201423.1
NCBI release date
2024-11-07
NCBI update date
2024-11-08

Alignment states and QC metrics

Completeness
98.98%
Length
11028
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
76
Total stop codons
0
Total unknown nucs
111

Sample details

Earliest release date
2024-11-07
Collection subdivision level 1
Connecticut
Collection country
USA
Collection date
2018-08-14
Collection date (lower bound)
2018-08-14
Collection date (upper bound)
2018-08-14
Isolate name
WO73G-8-14-Cxp

Host

Host name scientific
Culex pipiens
Host taxon id
7175

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • G237A
  • A288G
  • C435T
  • C600T
  • A630G
  • A1245G
  • T1442C
  • C1465T
  • C1599T
  • T1719A
  • T1807C
  • C1953T
  • C2227T
  • C2466T
  • G2802T
  • T2926C
  • C3033T
  • C3348T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:L111F

    • NS2A

  • NS2A:H119Y

    • NS3

  • NS3:E180D

    • NS4A

  • NS4A:A85T

    • NS5

  • NS5:D881N

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None