This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAGK.1

USA/LOC_000LAGK.1/2008-08-07
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2008-08-07
Earliest release date
2016-08-02
Sampling location
USA (Suffolk Co., NY)
Isolate name
WNV-1/Cyanocitta cristata /USA/08VER00851/2008

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547476.1
Submitting group
Date submitted
2026-07-01 18:03:48 UTC
Date released
2026-07-01 18:19:42 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
49
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K80R
  • NS2B:A103V
  • NS3:G178V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:M177T
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V156A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A459G
  • A630G
  • C660T
  • T932C
  • T1143C
  • T1442C
  • C1465T
  • C1803T
  • C1926T
  • T2367C
  • C2466T
  • A2708G
  • T3351C
  • C3654T
  • G4008T
  • T4060C
  • C4107T
  • C4132T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K80R

NS3

  • NS3:G178V

NS4B

  • NS4B:M177T

env

  • env:V159A
  • env:L167F

prM

  • prM:V156A
Deletions
N/A
Insertions
N/A

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