This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LAGK.1

Germany/LOC_000LAGK.1/2019-11
S. Bierbaum, M. Panning & S. Boettcher

Robert Koch Institute, National Reference Centre for Poliomyelitis and Enteroviruses

Sample details

Collection date
2019-11
Earliest release date
2020-01-12
Sampling location
Germany
Isolate name
DE-FR-19/EV-D68/2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-29 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-01-12
NCBI update date
2020-01-12
INSDC accession

Host

Host

Submission details

Submission ID
MN832500.1
Submitting group
Date submitted
2026-05-29 16:00:06 UTC
Date released
2026-05-29 16:07:57 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
132
Length
927 (12.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • T2389A
  • C2390T
  • A2392G
  • T2421C
  • G2425A
  • G2427T
  • T2433C
  • C2439T
  • T2454C
  • G2463A
  • C2478T
  • G2490A
  • T2499C
  • C2500T
  • T2517A
  • T2526A
  • C2529T
  • C2550T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:S1I
  • VP1:N2D
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95T
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
  • VP1:E169K
  • VP1:N218T
Deletions
N/A
Insertions
N/A

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