This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LA81.1

unknown/3037/unknown
T. Khatun & S. Chatterjee

ICMR Virus Unit, Virus unit

Sample details

Earliest release date
2018-01-01
Isolate name
3037

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-15 20:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-01-01
NCBI update date
2018-01-01
INSDC accession

Host

Host

Submission details

Submission ID
KY421788.1
Submitting group
Date submitted
2026-03-15 20:25:42 UTC
Date released
2026-03-15 20:56:17 UTC

Lineage

Lineage
5

Files

annotations

Alignment and QC

Total SNPs
69
Total deleted nucs
164
Total frame shifts
1
Frame shifts
NS5:333-905(nt:8677-10395)
Length
312 (4.32%)
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C8307T
  • C8313T
  • A8316G
  • G8328A
  • C8331T
  • T8340C
  • G8346T
  • T8349C
  • G8351A
  • A8352G
  • T8355C
  • A8358T
  • C8361T
  • T8364C
  • G8365A
  • G8367T
  • A8370G
  • T8374G
Deletions

8601-8676, 8683-8770
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:R224Q
  • NS5:V229I
  • NS5:S232A
  • NS5:Y254F
  • NS5:I283V
  • NS5:R287K
  • NS5:S291G
Deletions

NS5

NS5:308-332
Insertions
N/A

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