This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LA81.1

Viet_Nam/LOC_000LA81.1/2014
A. T. Nguyen, T. T. Tran, V. M. Hoang, N. M. Nghiem, N. N. Le, T. T. Le, Q. T. Phan, K. H. Truong, V. L. Ho, V. C. Do, T. M. Ha, H. T. Nguyen, C. V. Nguyen, G. Thwaites, H. R. van Doorn, T. V. Le, V. M. T. Hoang, N. N. T. Le, T. T. M. Le, C. V. V. Nguyen & H. van Doorn

Oxford University Clinical Research Unit, Emerging Infections

Sample details

Collection date
2014
Earliest release date
2016-07-22
Sampling location
Viet Nam (Ho Chi Minh)
Isolate name
CVA10/Homo sapiens/VNM/5.2/2014

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-07-22
NCBI update date
2016-07-22
INSDC accession

Host

Host

Submission details

Submission ID
KX430804.1
Submitting group
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
1457
Total deleted nucs
5
Length
7249 (97.9%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions
  • G156A
  • C170T
  • T179A
  • T180C
  • C189T
  • T237C
  • T260C
  • G266A
  • G273T
  • G277A
  • T278C
  • A282G
  • C300T
  • C308A
  • C323T
  • T324C
  • G329A
  • A330G
Deletions
309-311, 541, 7335
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

2A

  • 2A:V29A
  • 2A:N57E
  • 2A:I82V
  • 2A:E102A
  • 2A:L123I
  • 2A:D136N

2B

  • 2B:E36D
  • 2B:S94P

2C

  • 2C:N9S
  • 2C:L56M
  • 2C:S61A
  • 2C:A75V
  • 2C:I76M
  • 2C:K106R
  • 2C:V108M
  • 2C:Y243F
  • 2C:K293R
  • 2C:M306V
  • 2C:N315S
  • 2C:V320I

3A

  • 3A:E13D
  • 3A:T17A
  • 3A:E39D
  • 3A:T47V

3C

  • 3C:A18V
  • 3C:I30V
  • 3C:I49V
  • 3C:I86V
  • 3C:T93S
  • 3C:A95S
  • 3C:I116V
  • 3C:A180T
  • 3C:E182A

3D

  • 3D:N32D
  • 3D:T66V
  • 3D:T75K
  • 3D:S93N
  • 3D:V134T
  • 3D:T138I
  • 3D:S139T
  • 3D:L143F
  • 3D:V197T
  • 3D:I205V
  • 3D:S236G
  • 3D:L251I
  • 3D:E255D
  • 3D:L342F
  • 3D:R346K
  • 3D:R396K
  • 3D:E428D
  • 3D:T436S
  • 3D:I442V

VP1

  • VP1:S13G
  • VP1:V16A
  • VP1:T21S
  • VP1:G23A
  • VP1:Q24T
  • VP1:D25N
  • VP1:N27E
  • VP1:T28S
  • VP1:G31N
  • VP1:A33T
  • VP1:M70V
  • VP1:A78T
  • VP1:S81N
  • VP1:D101N
  • VP1:V107T
  • VP1:F148Y
  • VP1:Q223L
  • VP1:V240E

VP2

  • VP2:L132I
  • VP2:N150T
  • VP2:A157T
  • VP2:S160T
  • VP2:N162H
  • VP2:S176A
  • VP2:I194V
  • VP2:V218I
  • VP2:V237I

VP3

  • VP3:L2I
  • VP3:T4A
  • VP3:E17D
  • VP3:S29T
  • VP3:S33I
  • VP3:R41H
  • VP3:D60E
  • VP3:N65T
  • VP3:A73S
  • VP3:I131V

VP4

  • VP4:S7T
  • VP4:R9K
  • VP4:S42T
  • VP4:R62K
Deletions
N/A
Insertions
N/A

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