This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000LA81.1

unknown/52638/unknown
T. Khatun & S. Chatterjee

ICMR Virus Unit, Virus unit

Sample details

Earliest release date
2018-01-01
Isolate name
52638

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-09 12:53insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-01-01
NCBI update date
2018-01-01
INSDC accession

Host

Host

Submission details

Submission ID
KY421794.1
Submitting group
Date submitted
2026-03-09 12:53:36 UTC
Date released
2026-03-09 13:04:51 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Total deleted nucs
4293
Total frame shifts
3
Frame shifts
NS4A:83-126(nt:6714-6846),NS4B:179-255(nt:7448-7680),NS5:663-905(nt:9667-10395)
Length
252 (41.2%)
Amino Acid Mutations from founder clade
  • NS3:R595S
  • NS3:I597T
  • NS4A:I3L
  • NS4A:K11R
  • NS4B:T40I
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G6387T
  • G6390A
  • C6394A
  • C6396T
  • T6401C
  • T6402A
  • C6408A
  • G6411A
  • G6414C
  • C6417T
  • G6420A
  • T6423C
  • A6432C
  • C6433T
  • A6435G
  • G6447A
  • C6450T
  • C6453T
Deletions

6574-6713, 6723-7025, 7036-7447, 7456-8835, 8841-9666, 9673-10556, 10560-10626, 10633-10785, 10792-10905, 10910-10923
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:R595S
  • NS3:I597T

NS4A

  • NS4A:I3L
  • NS4A:K11R

NS4B

  • NS4B:T40I
Deletions

NS4A

NS4A:36-82

NS4B

NS4B:41-178

NS5

NS5:354-662
Insertions
N/A

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