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LOC_000L9SZ.1
Download
Download FASTA
Download metadata TSV
Thailand/LOC_000L9SZ.1/2011-08-15
P. Noisumdaeng,
K. Sangsiriwut,
J. Prasertsopon,
C. Klinmalai,
R. Buathong,
S. Iamsirithaworn,
A. Mungaomklang &
P. Puthavathana
Center of Research and Innovation, Faculty of Medical Technology, Mahidol University
Sample details
Collection date
2011-08-15
Earliest release date
2017-03-14
Sampling location
Thailand
Isolate name
SiICRC10/TH/2011
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-03-14
NCBI update date
2017-03-14
INSDC accession
KX372311.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KX372311.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-17 10:32:30 UTC
Date released
2026-07-17 10:38:28 UTC
Clade
Clade EV-A71
B5
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
1458
Total inserted nucs
23
Total deleted nucs
4
Length
7427 (100%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
C
28
T
G
35
A
T
36
C
T
41
G
G
42
C
C
45
T
T
51
C
A
54
T
T
67
A
T
71
C
A
76
G
T
88
C
A
89
G
T
95
A
T
99
C
G
100
A
T
102
C
C
106
T
Show more
Deletions
20, 60, 693, 704
Insertions
ins_10:C, ins_63:A, ins_128:CT, ins_707:AC, ins_739:TC, ins_7408:AAAAAAAAAAAAAAA
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
N
57
D
2A:
R
68
K
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
A
2A:
Q
117
H
2A:
S
129
N
2B
2B:
R
11
D
2B:
K
29
R
2B:
E
36
D
2B:
V
47
I
2B:
S
85
A
2B:
M
95
I
2C
2C:
N
13
S
2C:
F
22
S
2C:
K
33
R
2C:
I
37
V
2C:
K
41
R
2C:
V
44
A
2C:
N
48
T
2C:
V
60
I
2C:
S
61
T
2C:
I
81
S
2C:
F
90
Y
2C:
A
103
V
2C:
R
151
H
2C:
A
173
T
2C:
V
200
I
2C:
A
224
S
2C:
T
271
S
2C:
N
316
S
3B
3B:
P
9
Q
3B:
I
10
V
3B:
K
12
R
3C
3C:
A
18
V
3C:
R
33
H
3C:
I
36
V
3C:
S
41
A
3C:
I
54
V
3C:
V
60
I
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
I
109
M
3C:
P
144
A
3C:
I
158
V
3C:
A
169
G
3C:
E
182
V
3D
3D:
M
6
V
3D:
P
8
S
3D:
R
10
K
3D:
N
16
S
3D:
N
37
S
3D:
K
38
R
3D:
T
66
V
3D:
N
91
D
3D:
Y
106
N
3D:
H
113
C
3D:
T
138
V
3D:
R
140
K
3D:
L
143
F
3D:
N
154
Y
3D:
S
163
R
3D:
S
164
P
3D:
R
169
K
3D:
E
172
K
Show more
VP1
VP1:
K
18
R
VP1:
P
22
R
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
43
E
VP1:
A
58
T
VP1:
R
145
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
184
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
S
275
A
VP1:
D
282
N
VP1:
T
289
A
VP1:
T
292
A
VP2
VP2:
N
45
D
VP2:
P
94
Q
VP2:
V
126
I
VP2:
N
143
D
VP2:
I
170
V
VP2:
V
177
I
VP3
VP3:
L
6
P
VP3:
D
234
H
VP3:
E
237
Q
VP3:
T
240
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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