This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L8UW.1

Display Name: USA/LOC_000L8UW.1/2018-08-09
N. M. Feriancek, M. I. Breban, E. Bourgikos, A. Bransfield, P. M. Armstrong, C. B. Vogels & N. D. Grubaugh

Sample details

Collection date
2018-08-09
Collection date (lower bound)
2018-08-09
Collection date (upper bound)
2018-08-09
Earliest release date
2024-11-07
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
SM88G-8-9-Cxp-3

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Yale School of Public Health, New Haven, CT

INSDC

NCBI release date
2024-11-07
NCBI update date
2024-11-08
INSDC accession
Bioproject accession
Biosample accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10917
Total SNPs
80
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
98.98%
Total stop codons
0

Submission details

Submission ID
OZ201321.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:41:48 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • A630G
  • G829A
  • T1442C
  • C1465T
  • G1662A
  • A1683G
  • C1750T
  • T1830C
  • C2011T
  • C2109T
  • C2304T
  • C2466T
  • A3486G
  • C3501T
  • T3528C
  • C3912T
  • C3969T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:R188K

    • NS4B

  • NS4B:V186L
  • NS4B:I240M

    • NS5

  • NS5:G805R

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:V122I
    • Deletions
    None
    Insertions
    None

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