This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L6Q6.1

Display Name: Spain/LOC_000L6Q6.1
J. Perez-Florido

Sample details

Collection date (upper bound)
2021-11-05
Earliest release date
2021-11-05
Collection country
Spain
Isolate name
not_provided

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-17 15:27insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

INSDC

NCBI release date
2021-11-05
NCBI update date
2021-11-05
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
10878
Total SNPs
453
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
3
Total unknown nucs
459
Total frame shifts
0
Completeness
94.44%
Total stop codons
0

Submission details

Submission ID
OU953897.1
Submitting group
Date submitted
2025-09-17 15:27:01 UTC
Date released
2025-09-17 15:42:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • G222A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
  • G786A
  • T826C
  • T850C
  • C858T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S
  • NS1:K170R

    • NS2A

  • NS2A:G211R

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K41R
  • NS5:R422K

    • capsid

  • capsid:A52T

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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