This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L6Q6.1

USA/LOC_000L6Q6.1/2009-08-14
R. Shabman, S. R. Das, R. A. Halpin, M. Shilts, N. Fedorova, V. Puri, P. Amedeo, S. Shrivastava, J. Maffei, A. Dupuis, S. Jones, B. Backenson, S. Zink, A. Ciota & L. Kramer

J. Craig Venter Institute

Sample details

Collection date
2009-08-14
Earliest release date
2016-08-02
Sampling location
USA (Rockland Co., NY)
Isolate name
WNV-1/Culex/USA/09430366/2009

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2016-08-02
NCBI update date
2016-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
KX547348.1
Submitting group
Date submitted
2026-07-01 18:03:48 UTC
Date released
2026-07-01 18:18:29 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
58
Length
10787 (97.8%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T163A
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • capsid:V121A
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:I35T
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T458C
  • T549C
  • T569C
  • A630G
  • C906T
  • C1170T
  • T1368C
  • T1442C
  • C1465T
  • C2175T
  • C2466T
  • T2832C
  • C2853T
  • A2956G
  • C3888T
  • C4017T
  • C4107T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T163A

capsid

  • capsid:V121A

env

  • env:V159A
  • env:L167F

prM

  • prM:I35T
Deletions
N/A
Insertions
N/A

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