This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L5B0.1

Display Name: Spain/LOC_000L5B0.1/2021-08-30
Z. Varga, R. B. Mari, J. R. Iranzo, K. Kurucz, E. G. Toth, B. Zana, S. Zeghbib, T. Gorfol, F. Jakab, G. Kemenesi & P. Urban

Sample details

Collection date
2021-08-30
Collection date (lower bound)
2021-08-30
Collection date (upper bound)
2021-08-30
Earliest release date
2023-10-10
Collection country
Spain
Isolate name
8/1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-14 19:38insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Pecs, National Laboratory of Virology

INSDC

NCBI release date
2023-10-10
NCBI update date
2023-10-10
INSDC accession

Host

Host taxon id
Host name scientific
Anopheles atroparvus

Alignment and QC metrics

Length
10962
Total SNPs
484
Total inserted nucs
1
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
99.38%
Total stop codons
0

Submission details

Submission ID
OR472391.1
Submitting group
Date submitted
2026-01-14 19:38:00 UTC
Date released
2026-01-14 19:53:50 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T195A
  • T234C
  • G250A
  • C282T
  • A288G
  • G354A
  • C381T
  • C445A
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • A630G
  • T639C
  • T642C
  • C711T
    • Deletions
    None
    Insertions
    ins_10492:A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S
  • NS1:K170R

    • NS2A

  • NS2A:G211R

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:A177V
  • NS3:P249T
  • NS3:T356I
  • NS3:T436A

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K41R
  • NS5:R422K

    • capsid

  • capsid:A52T
  • capsid:L117M

    • env

  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue