This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4VY.1

Thailand/LOC_000L4VY.1/2017
J. Puenpa, C. Auphimai, S. Korkong, S. Vongpunsawad, Y. Poovorawan & J. Chansaenroj

Center of Excellence in Clinical Virology

Sample details

Collection date
2017
Earliest release date
2018-07-18
Sampling location
Thailand
Isolate name
CVA16_THA/CU2831/2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-01 11:59insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2018-07-18
NCBI update date
2018-07-18
INSDC accession

Host

Host

Submission details

Submission ID
MG844132.1
Submitting group
Date submitted
2026-04-01 11:58:55 UTC
Date released
2026-04-01 12:18:29 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
80
Length
306 (4.13%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • C2580A
  • C2583A
  • T2584C
  • C2587A
  • A2588C
  • G2589A
  • T2592A
  • C2594T
  • A2595G
  • C2600T
  • C2601G
  • C2604G
  • C2607G
  • T2610A
  • T2613A
  • A2619C
  • C2620A
  • A2621G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:Q48T
  • VP1:A50V
  • VP1:T52M
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
Deletions
N/A
Insertions
N/A

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