This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4VY.1

USA/LOC_000L4VY.1/2012-06-21
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2012-06-21
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/mosquito/Sacramento-CA-USA/2012-06-21/W0686

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-06 10:58insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721836.1
Submitting group
Date submitted
2026-06-06 10:58:20 UTC
Date released
2026-06-06 11:19:25 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
72
Total unknown nucs
211
Length
10302 (91.5%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:V88I
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:I80M
  • NS4A:V85A
  • NS4B:E249G
  • NS4B:G252E
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • env:I481V
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • T477C
  • T609C
  • A630G
  • C660T
  • C1119T
  • T1442C
  • T1443C
  • G1455A
  • C1465T
  • T1611C
  • T1818C
  • T1956C
  • A2407G
  • C2448T
  • C2466T
  • C2652T
  • G2731A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:V88I

NS3

  • NS3:I162M

NS4A

  • NS4A:I80M

NS4B

  • NS4B:E249G
  • NS4B:G252E

env

  • env:V159A
  • env:L167F
  • env:I481V
Deletions
N/A
Insertions
N/A

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