This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4VY.1

Display Name: Greece/LOC_000L4VY.1/2022-02-25
Athanasakopoulou, Z.; Sofia, M.; Skampardonis, V.; Giannakopoulos, A.; Birtsas, P.; Tsolakos, K.; Spyrou, V.; Chatzopoulos, D. C.; Satra, M.; Diamantopoulos, V.; Mpellou, S.; Galamatis, D.; G Papatsiros, V.; Billinis, C.; Tsolakos, C.; Papatsiros, V. G.

Submission details

Submission ID
OR825046.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-12-23 19:43:09 UTC
Date released
2024-12-23 19:50:50 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-12-23 19:43insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Faculty of Veterinary Science, University of Thessaly, Microbiology and Parasitology

Alignment states and QC metrics

Completeness
3.22%
Length
355
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
67
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-12-03
Collection subdivision level 1
Arcadia
Collection country
Greece
Collection date
2022-02-25
Collection date (lower bound)
2022-02-25
Collection date (upper bound)
2022-02-25
Isolate name
GRE-Wild bird6

Host

Host name scientific
Corvidae
Host taxon id
28725

INSDC

INSDC accession
OR825046.1
NCBI release date
2023-12-03
NCBI update date
2023-12-03

Lineage

Lineage
2

Nucleotide mutations

Substitutions

  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295C
  • G5308T
  • A5313G
  • A5316C
  • G5328T
  • G5343A
  • A5346C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS3

  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
    • Deletions
    None
    Insertions
    None