This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000L4ME.1

USA/LOC_000L4ME.1/2002-08-15
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2002-08-15
Earliest release date
2023-08-02
Sampling location
USA (Otter Tail, Minnesota)
Isolate name
WNV/bird/OtterTail-MN-USA/2002-08-15/W1386

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-05 11:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721857.1
Submitting group
Date submitted
2026-05-05 11:09:41 UTC
Date released
2026-05-05 11:41:43 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
20
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I245M
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A630G
  • T1442C
  • C1465T
  • C2466T
  • C2778T
  • C4107T
  • A4146G
  • C4803T
  • G5280A
  • T5514C
  • C6138T
  • T6405C
  • C6426T
  • C6996T
  • A7650G
  • T7938C
  • T8235C
  • T9165C
  • C9352T
  • C10338T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4B

  • NS4B:I245M

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue