This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

Display Name: USA/LOC_000KXY1.1/2008-04-16
N. Grubaugh, N. Matteson, K. Gangavarupa, N. Gurfield, S. Grewal, J. Tuncap & K. Andersen

Sample details

Collection date
2008-04-16
Collection date (lower bound)
2008-04-16
Collection date (upper bound)
2008-04-16
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
San Diego, California
Isolate name
WNV/bird/San_Diego-CA-USA/2008-04-16/W0025

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-01-16 21:17insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Corvus brachyrhynchos

Alignment and QC metrics

Length
10302
Total SNPs
50
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
1814
Total frame shifts
0
Completeness
76.96%
Total stop codons
0

Submission details

Submission ID
OQ721627.1
Submitting group
Date submitted
2026-01-16 21:17:47 UTC
Date released
2026-01-16 21:34:38 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A407G
  • C435T
  • A564G
  • A630G
  • C1065T
  • C1170T
  • C1569T
  • G1662A
  • C1707T
  • C1750T
  • C2466T
  • A3634G
  • A3640C
  • A3723G
  • C4107T
  • A4146G
  • T4212C
  • T4290C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:I37V
  • NS2A:I39L

    • NS2B

  • NS2B:V120I

    • capsid

  • capsid:K104R
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue