This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

USA/LOC_000KXY1.1/2015-07-07
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-07-07
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/mosquito/Sacramento-CA-USA/2015-07-07/W0705

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-17 17:37insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721641.1
Submitting group
Date submitted
2026-02-17 17:37:27 UTC
Date released
2026-02-17 17:59:21 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Total unknown nucs
13
Length
10302 (93.3%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • A288G
  • C292T
  • A630G
  • C660T
  • C762T
  • C1134T
  • T1442C
  • C1465T
  • A1518G
  • A1527G
  • T1980C
  • C2080T
  • A2205G
  • T2259C
  • C2448T
  • C2466T
  • C2652T
    • Deletions
    N/A
    Insertions
    N/A

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • NS2A

  • NS2A:M80V
  • NS2A:K96R

    • NS3

  • NS3:V582I

    • NS4B

  • NS4B:F119L

    • NS5

  • NS5:T25N
  • NS5:Y887H

    • env

  • env:V159A
  • env:L167F
    • Deletions
    N/A
    Insertions
    N/A

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