This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

USA/LOC_000KXY1.1/2015-07-07
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2015-07-07
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/mosquito/Sacramento-CA-USA/2015-07-07/W0705

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 17:57insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721641.1
Submitting group
Date submitted
2026-03-10 17:57:25 UTC
Date released
2026-03-10 18:16:06 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
86
Total unknown nucs
13
Length
10302 (93.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:M80V
  • NS2A:K96R
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS3:V582I
  • NS4A:V85A
  • NS4B:F119L
  • NS5:T25N
  • NS5:K177R
  • NS5:Y887H
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G177A
  • A288G
  • C292T
  • A630G
  • C660T
  • C762T
  • C1134T
  • T1442C
  • C1465T
  • A1518G
  • A1527G
  • T1980C
  • C2080T
  • A2205G
  • T2259C
  • C2448T
  • C2466T
  • C2652T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:M80V
  • NS2A:K96R

NS3

  • NS3:V582I

NS4B

  • NS4B:F119L

NS5

  • NS5:T25N
  • NS5:Y887H

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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