This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

USA/LOC_000KXY1.1/2016-05-19
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2016-05-19
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/bird/Sacramento-CA-USA/2016-05-19/W0769

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-21 21:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721799.1
Submitting group
Date submitted
2026-03-21 21:23:31 UTC
Date released
2026-03-21 21:44:49 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
87
Total unknown nucs
640
Length
10302 (87.6%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS1:N147D
  • NS2B:T34S
  • NS2B:A103V
  • NS3:I162M
  • NS3:M171V
  • NS3:L192M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:G30R
  • NS5:K177R
  • NS5:K314R
  • NS5:K503R
  • capsid:K79R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A332G
  • T477C
  • A630G
  • C660T
  • C732T
  • T1062C
  • T1442C
  • G1455A
  • C1465T
  • A1566G
  • C1569T
  • T2250C
  • A2908G
  • T3160C
  • C3474T
  • C3570T
  • A3690G
  • G3900T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS1

  • NS1:N147D

NS2B

  • NS2B:T34S

NS3

  • NS3:I162M
  • NS3:M171V
  • NS3:L192M

NS4B

  • NS4B:G30R

NS5

  • NS5:K314R
  • NS5:K503R

capsid

  • capsid:K79R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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