This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

USA/LOC_000KXY1.1/2018-08-06
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2018-08-06
Earliest release date
2023-08-02
Sampling location
USA (Larimer, Colorado)
Isolate name
WNV/mosquito/Larimer-CO-USA/2018-08-06/W1841

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-03 13:47insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host

Submission details

Submission ID
OQ721810.1
Submitting group
Date submitted
2026-03-03 13:47:06 UTC
Date released
2026-03-03 14:03:34 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
84
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K102R
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:I54V
  • NS4A:V85A
  • NS4B:I176V
  • NS4B:I240M
  • NS5:K177R
  • NS5:K280R
  • NS5:S423N
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:F155L
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • A630G
  • T928C
  • G1152A
  • T1442C
  • C1465T
  • C1572T
  • G1662A
  • C1750T
  • C1869T
  • C2109T
  • C2304T
  • C2466T
  • A2774G
  • A2928G
  • C3066T
  • T3156C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K102R

NS2A

  • NS2A:R188K

NS4A

  • NS4A:I54V

NS4B

  • NS4B:I176V
  • NS4B:I240M

NS5

  • NS5:K280R
  • NS5:S423N

env

  • env:V159A
  • env:L167F

prM

  • prM:F155L
Deletions
N/A
Insertions
N/A

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