This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXY1.1

USA/LOC_000KXY1.1/2004-07-23
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2004-07-23
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/mosquito/Sacramento-CA-USA/2004-07-23/W0629

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-27 21:39insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721630.1
Submitting group
Date submitted
2026-03-27 21:39:00 UTC
Date released
2026-03-27 22:06:58 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
41
Total unknown nucs
523
Length
10302 (88.7%)
Amino Acid Mutations from founder clade
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:D881E
  • capsid:A94V
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C377T
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • G5421A
  • C6138T
  • A6204G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:D881E

capsid

  • capsid:A94V

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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