This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXX3.1

Display Name: USA/LOC_000KXX3.1/2005-07-12
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

Sample details

Collection date
2005-07-12
Collection date (lower bound)
2005-07-12
Collection date (upper bound)
2005-07-12
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Sacramento, California

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-09-12 15:10insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
43
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721643.1
Submitting group
Date submitted
2025-09-12 15:10:02 UTC
Date released
2025-09-12 15:24:12 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A417G
  • G425A
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • G5421A
  • T5490C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    2K

  • 2K:S19G

    • capsid

  • capsid:G110E

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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