This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KXX3.1

USA/LOC_000KXX3.1/2004-07-14
N. Grubaugh, N. Matteson, K. Gangavarupa, D. Neitzel & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2004-07-14
Earliest release date
2023-08-02
Sampling location
USA (Hennepin, Minnesota)
Isolate name
WNV/bird/Hennepin-MN-USA/2004-07-14/W1472

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Submission details

Submission ID
OQ721609.1
Submitting group
Date submitted
2026-06-27 11:40:23 UTC
Date released
2026-06-27 11:57:48 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
37
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85T
  • NS5:K21R
  • NS5:K177R
  • NS5:D635G
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C3342T
  • T4060C
  • C4107T
  • A4146G
  • T4194C
  • C4803T
  • G5280A
  • C5493T
  • C6138T
  • C6238T
  • T6405C
  • C6426T
  • G6721A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS4A

  • NS4A:A85T

NS5

  • NS5:K21R
  • NS5:D635G

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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