This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KUSG.1

USA/LOC_000KUSG.1/2009-08-20
N. Grubaugh, N. Matteson, K. Gangavarupa, C. Barker, S. Wheeler, Y. Fang, L. Coffey, W. Reisen & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2009-08-20
Earliest release date
2023-08-02
Sampling location
USA (Sacramento, California)
Isolate name
WNV/mosquito/Sacramento-CA-USA/2009-08-20/W0668

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-10 12:19insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721533.1
Submitting group
Date submitted
2026-06-10 12:19:13 UTC
Date released
2026-06-10 12:38:11 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
55
Total unknown nucs
232
Length
10302 (91.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2A:A208T
  • NS2B:I31V
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:T67I
  • NS4B:F80S
  • NS5:K177R
  • NS5:S277R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T540C
  • A630G
  • C660T
  • G789A
  • A939G
  • T1442C
  • C1465T
  • A1848G
  • C2196T
  • C2466T
  • T2964C
  • G3045A
  • T3138C
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • G4147A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS2A

  • NS2A:A208T

NS2B

  • NS2B:I31V

NS4B

  • NS4B:T67I
  • NS4B:F80S

NS5

  • NS5:S277R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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