This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KUSG.1

Display Name: USA/LOC_000KUSG.1/2013-07-22
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

Sample details

Collection date
2013-07-22
Collection date (lower bound)
2013-07-22
Collection date (upper bound)
2013-07-22
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Larimer, Colorado

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-16 14:19insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex tarsalis

Alignment and QC metrics

Length
10302
Total SNPs
74
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721520.1
Submitting group
Date submitted
2025-10-16 14:19:38 UTC
Date released
2025-10-16 14:36:23 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T596C
  • A630G
  • T1442C
  • C1465T
  • T1600C
  • C1620T
  • G1662A
  • C1750T
  • C2109T
  • C2172T
  • C2304T
  • G2425T
  • C2466T
  • A2502G
  • C2598T
  • A2605G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I46V

    • NS2A

  • NS2A:R122C
  • NS2A:R188K

    • NS4A

  • NS4A:V62M

    • NS4B

  • NS4B:I240M

    • env

  • env:V159A
  • env:L167F
  • env:A487S

    • prM

  • prM:M44T
    • Deletions
    None
    Insertions
    None

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