This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000KP22.1

Display Name: USA/LOC_000KP22.1/2015-09-14
N. Grubaugh, N. Matteson, K. Gangavarupa, G. Ebel, R. Murrieta, J. Fauver, M. Young & K. Andersen

Sample details

Collection date
2015-09-14
Collection date (lower bound)
2015-09-14
Collection date (upper bound)
2015-09-14
Earliest release date
2023-08-02
Collection country
USA
Collection subdivision level 1
Larimer, Colorado

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-10-22 14:38insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Scripps Research Institute, Department of Immunology and Microbiology

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
Bioproject accession

Host

Host taxon id
Host name scientific
Culex pipiens

Alignment and QC metrics

Length
10302
Total SNPs
95
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
93.41%
Total stop codons
0

Submission details

Submission ID
OQ721342.1
Submitting group
Date submitted
2025-10-22 14:38:03 UTC
Date released
2025-10-22 14:52:56 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • C435T
  • T592C
  • A630G
  • G1191A
  • T1236C
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • T1923C
  • C2109T
  • C2304T
  • C2466T
  • T2475C
  • A2667G
  • A2844G
  • G3012A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:L95F
  • NS2A:R188K
  • NS2A:A208V

    • NS3

  • NS3:T356I
  • NS3:I597T

    • NS4A

  • NS4A:I54V

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:K76R

    • env

  • env:V159A
  • env:L167F

    • prM

  • prM:Y43H
    • Deletions
    None
    Insertions
    None

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