This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SDSH.1

USA/LOC_000SDSH.1/unknown
E. Deardorff, J. Estrada-Franco, A. C. Brault, R. Navarro-Lopez, A. Campomanes-Cortes, P. Paz-Ramirez, M. Solis-Hernandez, W. N. Ramey, C. T. Davis, D. W. Beasley, R. B. Tesh, A. D. Barrett, S. C. Weaver, E. R. Deardorff, J. G. Estrada-Franco, D. W. C. Beasley, C. Todd. Davis & A. D. T. Barrett

University of Texas Medical Branch, Department of Experimental Pathology

Sample details

Earliest release date
2006-01-01
Sampling location
USA (California)
Isolate name
F-CA-03 IMPR 102

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2006-01-01
NCBI update date
2006-01-30
INSDC accession

Host

Host

Submission details

Submission ID
DQ080055.1
Submitting group
Date submitted
2026-10-08 17:00:55 UTC
Date released
2026-10-08 17:02:44 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
37
Length
11018 (99.9%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:K110N
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C2466T
  • C2490T
  • A2799T
  • C3570T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • C4803T
  • C4827T
  • G5280A
  • G5421A
  • C6138T
  • A6204G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:K110N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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