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LOC_000SD9J.1
Download
Download FASTA
Download metadata TSV
Russia/LOC_000SD9J.1/2015-06-10
A. Volynkina,
E. Kotenev &
A. Kolosov
Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections
Sample details
Collection date
2015-06-10
Earliest release date
2020-07-27
Sampling location
Russia
Isolate name
111-ROS/HU-2015
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-26 13:14
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-07-27
INSDC accession L segment
MN624734.1
INSDC accession M segment
MN624503.1
INSDC accession S segment
MN624271.1
Submission details
Submission ID
MN624734.1.L/MN624503.1.M/MN624271.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-26 13:13:55 UTC
Date released
2026-03-26 13:18:32 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_000SD9J.1.embl
Alignment and QC
Total SNPs L segment
47
Length L segment
437 (3.61%)
Variant L segment
False
Total SNPs M segment
76
Length M segment
435 (7.97%)
Variant M segment
False
Total SNPs S segment
81
Length S segment
538 (29.8%)
Variant S segment
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
T
218
C
T
229
C
A
240
C
T
241
C
C
242
T
T
253
C
T
254
A
G
264
A
C
265
T
A
268
G
C
276
T
Show more
M segment
C
4640
T
T
4645
C
C
4648
T
A
4660
G
A
4663
G
T
4672
C
A
4685
G
A
4690
T
C
4697
A
A
4709
G
G
4714
A
C
4720
T
A
4723
G
A
4726
G
T
4738
A
T
4739
C
G
4741
A
C
4744
T
Show more
S segment
C
99
T
A
105
G
G
118
A
C
123
T
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
T
166
C
C
171
T
A
186
G
C
201
T
A
213
G
T
219
C
C
228
T
G
231
A
T
234
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
K
1533
E
GPC:
E
1534
D
GPC:
Q
1537
K
GPC:
N
1541
D
GPC:
N
1564
D
GPC:
G
1590
S
GPC:
I
1591
V
GPC:
N
1594
S
GPC:
V
1595
F
GPC:
I
1597
V
GPC:
F
1600
L
GPC:
T
1601
L
GPC:
I
1610
V
GPC:
R
1618
K
GPC:
K
1648
R
GPC:
N
1655
S
NP
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
RdRp
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
H
56
Y
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
Y
72
H
RdRp:
R
80
K
RdRp:
S
95
T
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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