This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD9J.1

Russia/LOC_000SD9J.1/2016-06-23
A. Volynkina, E. Kotenev & A. Kolosov

Stavropol State Research Anti-Plague Institute, Laboratory on Natural Focal Infections

Sample details

Collection date
2016-06-23
Earliest release date
2020-07-27
Sampling location
Russia
Isolate name
130-STV/HU-2016

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2020-07-27
INSDC accession S segment

Host

Host

Submission details

Submission ID
MN624350.1.S
Submitting group
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:03:18 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
95
Length S segment
538 (29.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C99T
  • A105G
  • G107T
  • T111C
  • A114G
  • C138T
  • T141C
  • T147C
  • G155A
  • T159G
  • T166C
  • G168A
  • G180C
  • C192A
  • C198A
  • C201T
  • A213G
  • G216A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:G23V
  • NP:S39N
  • NP:A100T
  • NP:S109N
  • NP:N125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:Q179L
  • NP:G185S
  • NP:D199E
Deletions
N/A
Insertions
N/A

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