This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD7N.1

Sudan/LOC_000SD7N.1/2018
L. Chitimia-Dobler

University of Hohenheim, Parasitology

Sample details

Collection date
2018
Earliest release date
2019-09-10
Sampling location
Sudan
Isolate name
IMB01

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-09-10
INSDC accession S segment

Host

Host

Submission details

Submission ID
MN097144.1.S
Submitting group
Date submitted
2026-09-19 07:58:20 UTC
Date released
2026-09-19 08:01:42 UTC

Clade & Lineage

Closest reference S segment
S11 (MK299338.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
44
Length S segment
237 (14.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & MK299338.1 references

Substitutions

S segment

  • A247T
  • T255G
  • A261G
  • G264C
  • A270G
  • T272A
  • A279T
  • A282C
  • G291A
  • T297C
  • T309C
  • A315T
  • T318A
  • A321G
  • G324A
  • A326G
  • T330C
  • T333C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & MK299338.1 references

Substitutions

NP

  • NP:T65S
  • NP:F73Y
  • NP:K91R
  • NP:S101G
  • NP:I117V
  • NP:S124A
  • NP:S125N
Deletions
N/A
Insertions
N/A

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