This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD7N.1

Egypt/CH857QAH01/2001-01-01
S. L. Yingst, T. A. Snider, D. E. Salman, M. D. Saad, I. Medhat, C. Fayez, R. K. Holt, A. K. Soliman & R. R. Graham

United States Naval Medical Research Unit No. 3, Virology Research Program

Sample details

Collection date
2001
Earliest release date
2005-05-31
Sampling location
Egypt (Sharqiya)
Isolate name
CH857QAH01

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2005-05-31
NCBI update date
2016-07-26
INSDC accession

Host

Host

Submission details

Submission ID
DQ055173.1
Submitting group
Date submitted
2026-10-08 17:00:55 UTC
Date released
2026-10-08 17:02:44 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
13
Length
315 (2.86%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G1365A
  • T1368C
  • C1377T
  • A1380G
  • T1389C
  • T1407C
  • C1422T
  • G1441A
  • A1446G
  • C1465T
  • G1521A
  • A1566T
  • C1599T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue