This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SD7N.1

Australia/5058/1990-01-01
A. T. Pyke & S. L. Doggett

Queensland Health Forensic and Scientific Services, Public Health Virology

Sample details

Collection date
1990
Earliest release date
2008-11-30
Sampling location
Australia (L. Cargellio, NSW)
Isolate name
5058

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-11 19:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2008-11-30
NCBI update date
2016-07-26
INSDC accession

Host

Host

Submission details

Submission ID
FJ375267.1
Submitting group
Date submitted
2026-05-11 19:34:32 UTC
Date released
2026-05-11 19:40:26 UTC

Lineage

Lineage
1B

Files

Annotations

Alignment and QC

Total SNPs
34
Total deleted nucs
7904
Total frame shifts
1
Frame shifts
env:101-501(nt:1267-2469)
Length
226 (73.7%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C1275T
  • C1278G
  • A1287T
  • T1305C
  • C1329T
  • T1332A
  • T1343C
  • A1350G
  • T1357C
  • G1359A
  • A1362G
  • T1368C
  • C1371T
  • C1377T
  • A1380G
  • C1386T
  • T1389C
  • C1395G
Deletions

1134-1266, 1483-9253
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions
N/A
Deletions

env

env:57-100
Insertions
N/A

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