This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBNT.1

Display Name: Norway/LOC_000SBNT.1/2002-07
E. Witso, G. Palacios, O. Cinek, L. C. Stene, B. Grinde, D. Janowitz, W. I. Lipkin, K. S. Ronningen & D. Janowicz

Sample details

Collection date
2002-07
Collection date (lower bound)
2002-07-01
Collection date (upper bound)
2002-07-31
Earliest release date
2006-11-07
Collection country
Norway
Isolate name
149

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:04insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Norwegian Institute of Public Health, Div. of Epidemiology

INSDC

NCBI release date
2006-11-07
INSDC accession CV-A16

Alignment and QC metrics CV-A16

Length CV-A16
366
Total SNPs CV-A16
82
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
4.94%

Submission details

Submission ID
DQ315523.1.CV-A16
Submitting group
Date submitted
2025-11-10 19:03:31 UTC
Date released
2025-11-10 19:09:46 UTC

Clade

Clade CV-A16
B1a

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T6480G
  • C6484T
  • A6486G
  • A6495T
  • G6498C
  • C6504T
  • G6511A
  • T6519A
  • C6522T
  • T6523C
  • G6525T
  • A6532G
  • C6533T
  • T6534G
  • A6543T
  • T6546C
  • A6549T
  • A6552C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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