This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBNT.1

Display Name: Sudan/LOC_000SBNT.1
C. O. Onyango, M. L. Opoka, T. G. Ksiazek, P. Formenty, A. Ahmed, P. M. Tukei, R. C. Sang, V. O. Ofula, S. L. Konongoi, R. L. Coldren, T. Grein, D. Legros, M. Bell, K. M. De Cock, W. J. Bellini, J. S. Towner, S. T. Nichol, P. E. Rollin & K. M. DeCock

Sample details

Collection date (upper bound)
2007-03-10
Earliest release date
2007-03-10
Collection country
Sudan
Isolate name
Yambio0403

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-03 11:14insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
MRC-The Gambia, Virology

INSDC

NCBI release date
2007-03-10
NCBI update date
2016-07-14
INSDC accession

Alignment and QC metrics

Length
343
Total SNPs
12
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
1.82%
Total stop codons
0

Submission details

Submission ID
EF183508.1
Submitting group
Date submitted
2025-11-03 11:14:43 UTC
Date released
2025-11-03 11:15:37 UTC

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • G13196A
  • C13247T
  • T13313C
  • C13367T
  • C13373T
  • A13379G
  • T13412C
  • A13415G
  • G13436A
  • A13439G
  • C13445T
  • C13454T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue