This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBKZ.1

Pakistan/LOC_000SBKZ.1/2017-10
A. Zohaib, M. Saqib, M. A. Athar, M. H. Hussain, A. U. Sial, M. H. Tayyab, M. Batool, H. Sadia, Z. Taj, U. Tahir, M. Y. Jakhrani, J. Tayyab, M. A. Kakar, M. F. Shahid, T. Yaqub, J. Zhang, Q. Wu, F. Deng, V. M. Corman, S. Shen, I. Khan, Z. L. Shi, A.-U.-R. Sial, F. Ahmed, S. Faiz, M. Furqan, S. Shu & Z.-L. Shi

Wuhan Institute of Virology, Key Lab of Special Pathogens

Sample details

Collection date
2017-10
Earliest release date
2020-03-31
Sampling location
Pakistan
Isolate name
61T/Pakistan

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-05 13:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-03-31
INSDC accession S segment

Host

Host

Submission details

Submission ID
MN135941.1.S
Submitting group
Date submitted
2026-06-05 13:42:52 UTC
Date released
2026-06-05 13:46:53 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
31
Length S segment
219 (12.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G306T
  • A309G
  • G312A
  • T318G
  • A321G
  • C327T
  • G339A
  • C342A
  • G351A
  • A363G
  • T369C
  • T387A
  • C390T
  • A393C
  • G409T
  • T414C
  • A423G
  • C429T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:D116E
  • NP:A124S
  • NP:A147V
Deletions
N/A
Insertions
N/A

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