This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Kazakhstan/LOC_000SBKZ.1
K. Abdiyeva, N. Turebekov, A. Dmitrovsky, N. Tukhanova, A. Shin, L. Yeraliyeva, N. Heinrich, M. Hoelscher, R. Yegemberdiyeva, Z. Shapiyeva, Z. Kachiyeva, A. Zhalmagambetova, J. Montag, G. Dobler, J. Zinner, E. Wagner, S. Frey & S. Essbauer

Bundeswehr Institute of Microbiology, Virology & Rickettsiology

Sample details

Earliest release date
2018-12-26
Sampling location
Kazakhstan (Shyiely)
Isolate name
Sh26

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-12-26
INSDC accession L segment
INSDC accession S segment

Submission details

Submission ID
MG974103.1.L/MG974102.1.S
Date submitted
2026-10-19 13:36:35 UTC
Date released
2026-10-19 13:39:56 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files


Alignment and QC

Total SNPs L segment
91
Length L segment
673 (5.56%)
Total SNPs S segment
19
Length S segment
181 (10%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • C2596T
  • G2602A
  • C2611T
  • A2617G
  • C2630T
  • A2632G
  • A2635G
  • G2644A
  • C2659T
  • A2665T
  • T2668C
  • A2674G
  • C2677T
  • A2683G
  • T2701C
  • G2704T
  • G2707A
  • G2716A

S segment

  • A1056G
  • T1062C
  • T1080A
  • G1083C
  • A1107G
  • A1113G
  • A1122G
  • C1131T
  • C1134T
  • T1137C
  • G1149A
  • C1177T
  • T1179G
  • A1182C
  • T1185C
  • A1200G
  • A1206T
  • G1218A
  • C1227T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

RdRp

  • RdRp:K940R
  • RdRp:T956A
  • RdRp:I1008V
  • RdRp:G1029S
  • RdRp:S1033A
  • RdRp:G1047E
  • RdRp:N1060S
Deletions
N/A
Insertions
N/A

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