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LOC_000SBKZ.1
Download
Download FASTA
Download metadata TSV
Bulgaria/LOC_000SBKZ.1/2012
B. L. Hua,
F. E. Scholte,
V. Ohlendorf,
A. Kopp,
M. Marklewitz,
C. Drosten,
S. T. Nichol,
C. Spiropoulou,
S. Junglen &
E. Bergeron
Institute of Virology, Charite Universitatsmedizin Berlin
Sample details
Collection date
2012
Earliest release date
2020-11-04
Sampling location
Bulgaria
Isolate name
Malko Tarnovo-BG2012-T1302
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-23 14:57
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-11-04
INSDC accession L segment
MK299340.1
INSDC accession M segment
MK299339.1
INSDC accession S segment
MK299338.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Rhipicephalus bursa)
Submission details
Submission ID
MK299340.1.L/MK299339.1.M/MK299338.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 14:57:32 UTC
Date released
2026-06-23 15:00:32 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (OR047158.1) (variant)
Closest reference S segment
S11 (MK299338.1)
Files
Annotations
LOC_000SBKZ.1.embl
Alignment and QC
Total SNPs M segment
1561
Total inserted nucs M segment
45
Total deleted nucs M segment
33
Length M segment
5364 (99.1%)
Total SNPs L segment
2684
Total inserted nucs L segment
63
Total deleted nucs L segment
42
Total ambiguous nucs L segment
1
Length L segment
12129 (100%)
Length S segment
1680 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
L segment
C
2
G
T
3
G
A
6
T
T
12
G
T
58
C
T
62
G
C
63
A
T
65
C
G
71
C
C
76
A
C
82
G
A
91
G
T
106
C
A
113
C
T
115
G
T
131
A
C
133
A
C
136
T
Show more
M segment
A
50
G
C
51
T
G
53
T
A
54
G
A
55
T
G
57
T
G
59
A
T
66
C
C
67
T
A
68
G
T
69
C
T
70
A
A
73
C
G
75
A
C
76
T
T
81
C
T
83
G
T
84
A
Show more
Deletions
L segment
15-55, 11935
M segment
347-358, 389-409
Insertions
L segment
ins_0:G, ins_11969:ACCCAGCAT, ins_12017:GTCATGGTCAATTC, ins_12051:AGCTTACTCTGCCTCATAT, ins_12096:GCAAGGGTGTGGGGGGAACG
M segment
ins_609:GGT, ins_707:CCACATCCCCAGTAG, ins_5194:CTCATTA, ins_5223:CCCCTCTCCACACCC, ins_5401:GTGCC
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
OR047158.1
&
MK299338.1
references
Substitutions
GPC
GPC:
L
2
S
GPC:
F
3
D
GPC:
E
6
M
GPC:
H
7
F
GPC:
M
8
L
GPC:
N
12
C
GPC:
F
13
T
GPC:
F
15
L
GPC:
C
16
H
GPC:
Q
17
K
GPC:
I
18
S
GPC:
L
19
P
GPC:
W
20
Q
GPC:
S
21
G
GPC:
G
22
V
GPC:
G
23
S
GPC:
G
24
A
GPC:
L
25
N
Show more
RdRp
RdRp:
D
2
E
RdRp:
I
13
L
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
L
64
I
RdRp:
E
66
K
RdRp:
S
67
T
RdRp:
R
70
Q
RdRp:
Q
74
L
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
S
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
S
124
N
Show more
Deletions
GPC
GPC:136-146
Insertions
GPC
ins_GPC:239:AQQTQP
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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