This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBKZ.1

Display Name: France/LOC_000SBKZ.1/2013
C. Hassel, A. Mirand, A. Lukashev, E. TerletskaiaLadwig, A. Farkas, I. Schuffenecker, S. Diedrich, H. P. Huemer, C. Archimbaud, H. Peigue-Lafeuille, C. Henquell, J. L. Bailly & J. Bailly

Sample details

Collection date
2013
Collection date (lower bound)
2013-01-01
Collection date (upper bound)
2013-12-31
Earliest release date
2014-03-20
Collection country
France
Collection subdivision level 1
Versailles

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-24 08:53insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
FRANCE

INSDC

NCBI release date
2014-03-20
NCBI update date
2016-03-02
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
891
Total SNPs
162
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.03%
Total stop codons
0

Submission details

Submission ID
HG934296.1
Submitting group
Date submitted
2025-12-24 08:53:43 UTC
Date released
2025-12-24 08:56:10 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • T2462C
  • C2468T
  • T2480C
  • T2489C
  • A2491G
  • G2492A
  • C2503G
  • T2508C
  • T2513G
  • C2519T
  • C2525T
  • C2527A
  • C2534G
  • A2537G
  • G2540A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
    • Deletions
    None
    Insertions
    None

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