This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SBAJ.1

Thailand/LOC_000SBAJ.1/2009
S. Chatproedprai, A. Theanboonlers, S. Korkong, C. Thongmee, S. Wananukul, Y. Poovorawan & A. Theamboonlers

Chulalongkorn University and Hospital, Pediatrics

Sample details

Collection date
2009
Earliest release date
2010-10-17
Sampling location
Thailand
Isolate name
Jirot(CU53)

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-10 16:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2010-10-17
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
GU458251.1
Submitting group
Date submitted
2026-04-10 15:59:51 UTC
Date released
2026-04-10 16:04:35 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
29
Total deleted nucs
1
Total ambiguous nucs
1
Total frame shifts
1
Frame shifts
VP1:242-297(nt:3160-3329)
Length
150 (2.02%)
Variant
False

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • A3017T
  • T3020C
  • A3026G
  • A3032G
  • C3035T
  • A3038C
  • A3044G
  • T3053C
  • A3059G
  • T3065C
  • A3068G
  • G3077A
  • G3083A
  • A3086G
  • G3092A
  • T3095C
  • C3098T
  • G3101A
Deletions

3159
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions
N/A
Deletions

VP1

VP1:241
Insertions
N/A

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