This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB7Q.1

China/LOC_000SB7Q.1/2017
Y. Zhang, S. Shen, Y. Fang, J. Liu, Z. Su, J. Liang, Z. Zhang, Q. Wu, C. Wang, A. Abudurexiti, Z. Hu, F. Deng, Y. H. Fang, Y. F. Zhang, J. L. Liu, Z. Y. Su, J. H. Liang, Q. L. Wu, Q. G. Wang, Z. H. Hu & Y. J. Zhang

Wuhan Institute of Virology, Chinese Academy of Sciences, State Key Laboratory of Virology

Sample details

Collection date
2017
Earliest release date
2019-09-21
Sampling location
China
Isolate name
WJQ16206

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-09-21
INSDC accession L segment
INSDC accession M segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
MG659722.1.L/MG659723.1.M/MG659724.1.S
Submitting group
Date submitted
2026-10-22 15:04:31 UTC
Date released
2026-10-22 15:07:32 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs M segment
681
Total inserted nucs M segment
44
Total deleted nucs M segment
12
Length M segment
5480 (99.8%)
Total SNPs L segment
1709
Total inserted nucs L segment
1210
Length L segment
13318 (100%)
Total SNPs S segment
225
Total inserted nucs S segment
21
Length S segment
1674 (91.5%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

L segment

  • C4T
  • T10C
  • G23C
  • G32A
  • A35G
  • C37T
  • G43T
  • T49C
  • T52A
  • C59T
  • C63G
  • C64T
  • T65C
  • T66C
  • T68C
  • G69A
  • G71C
  • C85T

M segment

  • A53G
  • G65A
  • T67C
  • G72A
  • C73T
  • A76G
  • T78C
  • G80A
  • C82T
  • A84G
  • T94C
  • A108G
  • T116C
  • C118T
  • T122C
  • A127G
  • G132A
  • C133T

S segment

  • T16A
  • C31G
  • T63C
  • C66T
  • A83G
  • A84G
  • A93G
  • A98T
  • A102G
  • T128A
  • C144T
  • G153A
  • T156C
  • T166C
  • G168A
  • C171T
  • A173G
  • G174A
Deletions

M segment

5285-5296
Insertions

L segment

ins_0:TGCGGCAACGATA, ins_25:T, ins_11925:GT, ins_12053:CTACAATTTCTCAACTGTTAGTTAACTCTCACCATCCC, ins_12087:CATTATTTCCGTTTTATTATTTCTGGGGTGTGGGGGGAACGAT, ins_12108:GGCTGTGCTGGCCACCTAAAAGATAATCAGTGAATTCTACCTGAAGTACTGAGGGACACTGCCTTCAAAAGGGCATACTATCCCAGCATGGGCATGAGCAGCCTGAAATTGCTGAAATATGTTCTGTTTATCTTTAACTTGCTTTTTTGGGTCTGTGGCTGTTGCATTTTGGGCTTTGGCATCTATTTCCTGGTCCAAAATACCTATGGAGTACTCTTCCGTAACCT...

M segment

ins_0:CGGCAACGATATCTT, ins_5166:A, ins_5356:TCTGTGGT, ins_5427:TACGGTTTCGTGAACCATGC

S segment

ins_0:ATATCTTTCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, MH396653.1 & OL774851.1 references

Substitutions

GPC

  • GPC:Y7C
  • GPC:F10L
  • GPC:C15Y
  • GPC:K19G
  • GPC:N21H
  • GPC:P23S
  • GPC:N31K
  • GPC:H33D
  • GPC:V34A
  • GPC:M35V
  • GPC:P38S
  • GPC:D39S
  • GPC:P44S
  • GPC:S49R
  • GPC:A51T
  • GPC:L52Q
  • GPC:P58S
  • GPC:S64T

NP

  • NP:K15R
  • NP:Y20F
  • NP:F30Y
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:K119N
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:R270K
  • NP:A307V
  • NP:Y315H
  • NP:T320S
  • NP:E322D
  • NP:Q405L
  • NP:R428K

RdRp

  • RdRp:S6N
  • RdRp:I13V
  • RdRp:A14D
  • RdRp:S19T
  • RdRp:N24S
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:I114V
  • RdRp:R156K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:D212E
Deletions
N/A
Insertions
N/A

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