This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB7Q.1

Cameroon/LOC_000SB7Q.1/2023
A. Namekong Fokeng, A. Paguem, M. Gasparine, K. Tanyi Manchang, F. Fewou Mfoujouem, S. Mvodo, R. Charrel, X. de Lamballerie & A. Falchi

Unite des Virus Emergents, Universite de Corse, Sciences et Techniques

Sample details

Collection date
2023
Earliest release date
2025-12-28
Sampling location
Cameroon
Isolate name
11-2

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-12-28
INSDC accession L segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
PX659871.2.L/PX659872.2.S
Submitting group
Date submitted
2026-11-02 13:32:02 UTC
Date released
2026-11-02 13:36:16 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
118
Total deleted nucs S segment
1
Total ambiguous nucs S segment
1
Total unknown nucs S segment
5
Length S segment
1542 (85.1%)
Total SNPs L segment
597
Total unknown nucs L segment
35
Length L segment
11565 (95.2%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • A379T
  • A385G
  • A388G
  • T394C
  • G457A
  • T484C
  • G490A
  • T550G
  • G553A
  • A571G
  • T581C
  • G610A
  • G616A
  • T631C
  • C649T
  • T689A
  • A692T
  • C718T

S segment

  • A162C
  • C183T
  • A186G
  • C192T
  • C201T
  • T219C
  • G231A
  • A255G
  • T279C
  • A309G
  • A311G
  • G330A
  • G339A
  • C342T
  • T369C
  • T384C
  • T387C
  • A393G
Deletions

S segment

1562
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K91R
  • NP:A124T
  • NP:N125G
  • NP:Q179L
  • NP:R428K
  • NP:I436V

RdRp

  • RdRp:S205T
  • RdRp:N206Y
  • RdRp:K219E
  • RdRp:C251Y
  • RdRp:K288N
  • RdRp:E299K
  • RdRp:F300L
  • RdRp:M303T
  • RdRp:D316N
  • RdRp:L321W
  • RdRp:E331K
  • RdRp:H338R
  • RdRp:F357S
  • RdRp:K364N
  • RdRp:L374P
  • RdRp:L379P
  • RdRp:K386T
  • RdRp:G389C
Deletions
N/A
Insertions
N/A

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