This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB7Q.1

Sudan/LOC_000SB7Q.1/2015
H. Bower, M. El Karsany, M. Alzain, B. Gannon, R. Mohamed, I. Mahmoud, M. Eldegail, R. Taha, A. El Halawi, A. Osman, S. Mohamednour, A. Semper, B. Atkinson, D. P. Carter, S. Dowall, J. Furneaux, V. Graham, J. Mellors, J. Osborne, S. T. Pullan, G. S. Slack, T. Brooks, R. Hewson, N. J. Beeching, J. Whitworth, D. Bausch & T. E. Fletcher

Public Health England, Genomics of Rare and Emerging Human Pathogens

Sample details

Collection date
2015
Earliest release date
2019-04-10
Sampling location
Sudan (Darfur)
Isolate name
Sudan Darfur 2015

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-17 13:01insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-04-10
INSDC accession L
INSDC accession M
INSDC accession S

Host

Host

Submission details

Submission ID
MK442895.1.L/MK442894.1.M/MK442893.1.S
Submitting group
Date submitted
2026-06-17 13:01:19 UTC
Date released
2026-06-17 13:04:48 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Alignment and QC

Total SNPs S
132
Total inserted nucs S
1
Length S
1644 (98.3%)
Total SNPs L
271
Total inserted nucs L
49
Total ambiguous nucs L
2
Total unknown nucs L
180
Length L
12153 (98.5%)
Total SNPs M
158
Total ambiguous nucs M
1
Total unknown nucs M
185
Length M
5359 (96.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • T10C
  • A40G
  • T65C
  • T70C
  • G93A
  • T151C
  • C244T
  • T254A
  • C295T
  • A298G
  • C313T
  • T340C
  • C427T
  • C481T
  • A544G
  • T550G
  • G553A
  • C568T

M

  • A57G
  • A87G
  • G110A
  • C120T
  • T173C
  • G197A
  • C217T
  • C231T
  • T259C
  • C320T
  • T360C
  • A374G
  • A377G
  • T385C
  • C404T
  • T406C
  • C410T
  • G414A

S

  • G47C
  • A50G
  • G54A
  • G67A
  • G99A
  • G100A
  • C178A
  • T181C
  • G189A
  • T199C
  • G202A
  • G229A
  • C235T
  • C244T
  • A247G
  • G271A
  • C295T
  • A298G
Deletions
N/A
Insertions

L

ins_12108:TTCATCGTCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTG

S

ins_1577:A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:M6I
  • GPC:L10F
  • GPC:M35I
  • GPC:P42L
  • GPC:P47S
  • GPC:L56P
  • GPC:S90P
  • GPC:V98A
  • GPC:L105S
  • GPC:G108S
  • GPC:P112S
  • GPC:S121F
  • GPC:A122T
  • GPC:P123L
  • GPC:N131S
  • GPC:S171P
  • GPC:S180P
  • GPC:P214T

NP

  • NP:R15K
  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
  • NP:I246V
  • NP:S301G
  • NP:K428R
  • NP:V436I

RdRp

  • RdRp:S6N
  • RdRp:Y60N
  • RdRp:I505T
  • RdRp:T767A
  • RdRp:A775T
  • RdRp:I783T
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
  • RdRp:A1038T
  • RdRp:G1047E
  • RdRp:V1228I
  • RdRp:F1279S
  • RdRp:N1367D
  • RdRp:M1647L
  • RdRp:P1660T
  • RdRp:T1675N
  • RdRp:R1676K
Deletions
N/A
Insertions
N/A

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