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LOC_000SB7Q.1
Download
Download FASTA
Download metadata TSV
USA/LOC_000SB7Q.1/2020-09-30
D. W. Hawman,
K. Meade-White,
S. Leventhal,
F. Feldmann,
A. Okumura,
B. Smith,
D. Scott,
H. Feldmann,
D. Sturdevant,
C. Martens &
K. Babian
Rocky Mountain Labs NIH/NIAD, Laboratory of Virology
Sample details
Collection date
2020-09-30
Earliest release date
2021-01-09
Sampling location
USA
Isolate name
MA/CCHFV
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-27 15:36
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2021-01-09
INSDC accession L
MW058028.1
INSDC accession M
MW058029.1
INSDC accession S
MW058030.1
Submission details
Submission ID
MW058028.1.L/MW058029.1.M/MW058030.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-27 15:36:32 UTC
Date released
2026-02-27 15:41:50 UTC
Host
Host
Mus musculus
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000SB7Q.1.embl
Alignment and QC
Total SNPs M
1035
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
1
Length M
5339 (99.5%)
Variant M
False
Total SNPs L
1295
Total inserted nucs L
23
Length L
12087 (99.6%)
Variant L
False
Total SNPs S
250
Total inserted nucs S
1
Length S
1623 (97%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
49
C
A
53
G
T
58
A
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
T
A
91
G
G
93
A
C
100
T
A
109
G
A
124
G
T
131
A
C
148
T
T
151
C
T
154
C
Show more
M
T
40
C
G
50
A
A
51
G
A
61
T
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
C
85
T
T
86
C
C
92
T
T
100
C
T
102
C
C
103
T
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
Show more
Deletions
M
333-335
Insertions
L
ins_67:C, ins_11928:CG, ins_12092:CTATTCATACC, ins_12108:GGGTGTGGG
M
ins_5171:T
S
ins_1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
228
M
NP:
I
246
V
NP:
K
251
E
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
G
449
N
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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