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LOC_000SB7Q.1
Download
Download FASTA
Download metadata TSV
Iran/LOC_000SB7Q.1/2017-08-03
V. Baniasadi,
H. Qaedi,
T. Jalali,
M. H. Pouriayevali,
M. Fazlalipour,
T. Mohammadi,
Z. Fereydouni,
K. Azadmanesh &
M. Salehi-Vaziri
Pasteur Institute of Iran, Arboviruses and Viral Hemorrhagic Fevers Department (National Ref Lab)
Sample details
Collection date
2017-08-03
Earliest release date
2019-01-08
Sampling location
Iran
Isolate name
Iran-5900
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-01-08
INSDC accession L segment
MH461099.1
INSDC accession M segment
MH461098.1
INSDC accession S segment
MH461097.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MH461099.1.L/MH461098.1.M/MH461097.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-04 15:29:38 UTC
Date released
2026-09-04 15:32:56 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000SB7Q.1.embl
Alignment and QC
Total SNPs S segment
216
Total inserted nucs S segment
3
Length S segment
1651 (91.3%)
Total SNPs L segment
1657
Total inserted nucs L segment
47
Total ambiguous nucs L segment
4
Length L segment
12143 (99.9%)
Total SNPs M segment
31
Length M segment
5341 (97.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
G
23
T
G
32
A
A
35
G
G
43
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
T
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M segment
A
251
G
T
326
C
C
449
T
G
634
A
A
664
C
C
720
T
C
817
T
G
836
A
C
913
T
T
1000
C
A
1130
G
A
1225
G
A
1382
G
A
1621
G
T
1777
C
C
1807
T
A
2338
G
G
2678
A
Show more
S segment
T
16
A
C
31
G
T
63
C
A
65
G
A
84
G
A
93
G
A
98
T
A
102
G
C
150
T
G
153
A
T
156
C
T
166
C
A
173
G
G
174
A
G
180
A
A
186
G
C
192
T
C
201
T
Show more
Deletions
N/A
Insertions
L segment
ins_58:T, ins_11917:CA, ins_12055:ACAATTTC, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAWCG
S segment
ins_0:CGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
T
55
A
GPC:
S
80
P
GPC:
P
121
S
GPC:
K
192
N
GPC:
S
211
L
GPC:
D
250
N
GPC:
T
348
A
GPC:
I
432
V
GPC:
V
864
I
NP
NP:
N
9
S
NP:
Y
20
F
NP:
K
45
R
NP:
V
83
A
NP:
D
116
E
NP:
A
124
S
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
N
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
N
236
S
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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