This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB5U.1

USA/IL2004MlCr/2004-06-09
L. Bertolotti, U. Kitron & T. L. Goldberg

University of Illinois at Urbana Champaign, Pathobiology

Sample details

Collection date
2004-06-09
Earliest release date
2006-12-15
Sampling location
USA (Illinois, Mclean)
Isolate name
IL2004MlCr

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2006-12-15
NCBI update date
2016-07-14
INSDC accession

Host

Host

Submission details

Submission ID
DQ874459.1
Submitting group
Date submitted
2026-08-26 20:01:00 UTC
Date released
2026-08-26 20:02:37 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
8
Length
1575 (14.3%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C1158T
  • C1317T
  • T1389C
  • T1442C
  • C1465T
  • T2190C
  • C2271T
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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