This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SB5U.1

Iran/LOC_000SB5U.1/2017-07-15
M. H. Pouriayevali, T. Jalali, T. Mohammadi, Z. Fereydouni, M. Tavakoli, S. Azad-Manjiri, M. Hosseini, M. Ghalejoogh, S. Khakifirouz, S. Azizizadeh, V. Baniasadi, M. Fazlalipour & M. Salehi-Vaziri

Pasteur Institute of Iran, Arboviruses and Viral Hemorrhagic Fevers Department (National Ref. Lab.)

Sample details

Collection date
2017-07-15
Earliest release date
2019-01-13
Sampling location
Iran
Isolate name
Iran-5811

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-01-13
INSDC accession S segment

Host

Host

Submission details

Submission ID
MH557793.1.S
Submitting group
Date submitted
2026-08-05 15:16:45 UTC
Date released
2026-08-05 15:20:57 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
25
Length S segment
173 (9.58%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G282T
  • T288C
  • C294T
  • T297C
  • A315G
  • G330A
  • A333G
  • G337A
  • G339A
  • C342G
  • T360C
  • T366C
  • T372C
  • A378C
  • T384G
  • A393C
  • A396G
  • A405G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:A100T
  • NP:N125S
Deletions
N/A
Insertions
N/A

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