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LOC_000SB5U.1
Download
Download FASTA
Download metadata TSV
Display Name: Turkey/LOC_000SB5U.1/2015-09-01
J. D'Addiego,
N. Wand,
B. Afrough,
T. Fletcher,
Y. Kurosaki,
H. Leblebicioglu &
R. Hewson
Sample details
Collection date
2015-09-01
Collection date (lower bound)
2015-09-01
Collection date (upper bound)
2015-09-01
Earliest release date
2023-08-29
Collection country
Turkey
Isolate name
13_OS
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-02-05 07:28
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2023-08-29
INSDC accession L
OQ454789.1
INSDC accession M
OQ454790.1
INSDC accession S
OQ454791.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
5099
Total SNPs L
548
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
1
Total frame shifts L
0
Completeness L
42.10%
Total stop codons L
0
Alignment and QC metrics M
Length M
3055
Total SNPs M
500
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
55.98%
Total stop codons M
0
Alignment and QC metrics S
Length S
1561
Total SNPs S
243
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
86.43%
Total stop codons S
0
Submission details
Submission ID
OQ454789.1.L/OQ454790.1.M/OQ454791.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-02-05 07:28:14 UTC
Date released
2026-02-05 07:32:30 UTC
Files
Annotations
LOC_000SB5U.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L
L:
T
202
C
L:
C
223
T
L:
T
229
C
L:
A
240
C
L:
T
250
C
L:
T
254
A
L:
A
262
G
L:
G
264
A
L:
C
265
T
L:
A
268
G
L:
C
276
T
L:
A
310
G
L:
C
313
T
L:
G
315
A
L:
A
316
G
L:
G
328
A
L:
C
331
T
L:
C
332
T
Show more
M
M:
T
1267
G
M:
A
1269
G
M:
C
1270
T
M:
A
1273
G
M:
G
1276
A
M:
T
1285
C
M:
C
1288
T
M:
T
1295
C
M:
A
1299
G
M:
C
1306
A
M:
T
1312
C
M:
T
1321
C
M:
G
1327
A
M:
G
1328
A
M:
A
1333
G
M:
C
1348
T
M:
G
1355
A
M:
T
1378
C
Show more
S
S:
T
63
C
S:
A
65
G
S:
A
93
G
S:
A
98
T
S:
C
99
T
S:
A
105
G
S:
G
118
A
S:
C
126
T
S:
T
141
C
S:
C
150
T
S:
G
155
A
S:
T
159
G
S:
T
166
C
S:
C
171
T
S:
A
186
G
S:
T
195
C
S:
C
201
G
S:
A
213
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
V
414
I
GPC:
V
423
I
GPC:
I
432
V
GPC:
A
433
V
GPC:
K
435
N
GPC:
I
438
V
GPC:
A
448
P
GPC:
I
449
V
GPC:
Q
453
R
GPC:
H
455
Y
GPC:
S
473
N
GPC:
F
482
V
GPC:
R
507
K
GPC:
R
510
K
GPC:
R
517
K
GPC:
S
523
P
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
G
184
S
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
I
223
L
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
Show more
Deletions
None
Insertions
None
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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