This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAXA.1

Russia/1-05-Rr/2005-01-01
A. E. Platonov, T. A. Shopenskaya, M. V. Fedorova, L. S. Karan, A. I. Frolov, G. V. Malenko, L. S. Levina & V. V. Pogodina

Central Research Institute of Epidemiology

Sample details

Collection date
2005
Earliest release date
2008-09-17
Sampling location
Russia (Volgograd)
Isolate name
1-05-Rr

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-11 19:35insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2008-09-17
NCBI update date
2008-09-17
INSDC accession

Host

Host

Submission details

Submission ID
FJ013245.1
Submitting group
Date submitted
2026-05-11 19:34:32 UTC
Date released
2026-05-11 19:39:05 UTC

Lineage

Lineage
4

Files

Annotations

Alignment and QC

Total SNPs
27
Total deleted nucs
2166
Length
222 (21.7%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A50T
  • A53G
  • C55G
  • A56G
  • C62T
  • G68A
  • C79T
  • C86A
  • C93T
  • G96A
  • C123A
  • G126A
  • G128A
  • T146A
  • G177A
  • T180A
  • T199C
  • C204T
Deletions

250-2415
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

capsid

  • capsid:S11N
  • capsid:L17Q
  • capsid:K41R
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue