This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000SAQQ.1

Display Name: Canada/LOC_000SAQQ.1/2007-07
R. L. C. H. Huzarewich, K. Surynicz & T. Booth

Sample details

Collection date
2007-07
Collection date (lower bound)
2007-07-01
Collection date (upper bound)
2007-07-31
Earliest release date
2011-08-01
Collection country
Canada
Isolate name
EV053_07

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-28 16:35insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Public Health Agency of Canada, Viral Diseases Division

INSDC

NCBI release date
2011-08-01

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7419
Total SNPs
1497
Total inserted nucs
14
Total deleted nucs
3
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
100.00%
Total stop codons
0

Submission details

Submission ID
HQ647175.1.EV-A71
Submitting group
Date submitted
2025-11-28 16:34:59 UTC
Date released
2025-11-28 16:47:14 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • T36C
  • C38T
  • T51C
  • A54T
  • T59C
  • T61C
  • C62T
  • T63G
  • C64A
  • A76G
  • A89T
  • C90T
  • C94T
  • T99C
  • T102A
  • T103G
  • A118T
  • A119G
    • Deletions
    20, 105, 106
    Insertions
    ins_739:TC, ins_7408:AAAAAAAAAAAA

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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