This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000S633.1
Download
Download FASTA
Download metadata TSV
United_Arab_Emirates/LOC_000S633.1/1998-10-26
M. Zivcec,
L. I. W. Guerrero,
C. G. Albarino,
E. Bergeron,
S. T. Nichol,
C. F. Spiropoulou,
L. Guerrero,
C. Albarino,
C. Spiropoulou &
S. Nichol
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
1998-10-26
Earliest release date
2017-09-05
Sampling location
United Arab Emirates
Isolate name
813042 UAE
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-10 12:20
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-09-05
INSDC accession L
MF289417.1
INSDC accession M
MF289418.1
INSDC accession S
MF289419.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MF289417.1.L/MF289418.1.M/MF289419.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-10 12:20:27 UTC
Date released
2026-06-10 12:24:23 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000S633.1.embl
Alignment and QC
Total SNPs L
1658
Total inserted nucs L
60
Length L
12146 (99.8%)
Total SNPs S
224
Total inserted nucs S
2
Total ambiguous nucs S
3
Length S
1674 (99.8%)
Total SNPs M
671
Length M
5359 (99.9%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
T
C
48
T
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
85
T
G
88
A
G
93
A
A
109
G
C
117
A
A
124
G
Show more
M
C
82
T
C
85
T
T
86
C
A
107
G
A
117
G
C
119
T
C
120
T
T
122
C
C
126
T
A
128
G
G
131
A
T
137
C
G
143
A
A
146
G
G
147
A
C
153
A
T
155
C
T
159
C
Show more
S
C
31
T
T
48
C
A
50
G
G
54
A
G
67
A
C
82
T
G
99
A
T
106
C
A
109
G
A
118
G
C
166
T
G
169
A
T
172
C
T
175
C
C
178
A
T
182
C
G
190
A
G
196
A
Show more
Deletions
N/A
Insertions
L
ins_58:T, ins_11917:CA, ins_12094:TATTCCACTTTCTTTGCTGTTCATGTCCGTTTTATTATTTCTGGGGTGTGGGGGGAA
S
ins_0:M, ins_1577:C
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
H
21
N
GPC:
S
23
P
GPC:
E
26
G
GPC:
R
28
E
GPC:
K
31
N
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
T
64
S
Show more
NP
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
E
322
D
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
113
D
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
K
275
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue