This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S633.1

USA/LOC_000S633.1/unknown
C. T. Davis, D. W. Beasley, H. Guzman, R. Raj, M. D'Anton, R. J. Novak, T. R. Unnasch, R. B. Tesh, A. D. Barrett & A. D. T. Barrett

University of Texas Medical Branch, Pathology

Sample details

Earliest release date
2004-02-27
Sampling location
USA (Colorado)
Isolate name
Colorado (2002)

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2004-02-27
NCBI update date
2016-07-26
INSDC accession

Submission details

Submission ID
AY428525.1
Submitting group
Date submitted
2026-10-27 17:00:55 UTC
Date released
2026-10-27 17:01:21 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
6
Length
2004 (18.2%)
Amino Acid Mutations from founder clade
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • A630G
  • C660T
  • T1442C
  • C1465T
  • A2094G
  • C2466T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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