This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S633.1

Armenia/LOC_000S633.1/2022
A. Zhirova, Y. Lisitskaya & A. Volynkina

Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Sample details

Collection date
2022
Earliest release date
2025-03-02
Sampling location
Armenia
Isolate name
375-ARM-TI-2022

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-03-02
INSDC accession S segment

Host

Host

Submission details

Submission ID
PQ878906.1.S
Submitting group
Date submitted
2026-09-29 15:19:38 UTC
Date released
2026-09-29 15:22:10 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
97
Length S segment
538 (29.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • C99T
  • A102G
  • A105G
  • G107C
  • T111C
  • A114G
  • T117C
  • C129T
  • C138T
  • T147C
  • G153A
  • G155A
  • T159G
  • T166C
  • G174A
  • G180A
  • C192A
  • A193G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:G23A
  • NP:S39N
  • NP:S52G
  • NP:A100T
  • NP:N125S
  • NP:N150S
  • NP:A154S
  • NP:S165P
  • NP:Q179L
  • NP:G185S
  • NP:P189S
  • NP:V198I
  • NP:D199E
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue