LOC_000S633.1

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United_Arab_Emirates/LOC_000S633.1/1995-09-16

M. Zivcec, L. I. W. Guerrero, C. G. Albarino, E. Bergeron, S. T. Nichol, C. F. Spiropoulou, L. Guerrero, C. Albarino, C. Spiropoulou & S. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date

1995-09-16

Earliest release date

2017-09-05

Sampling location

United Arab Emirates

Isolate name

813040 UAE

Data use terms

Changed	User	Data use terms
2026-06-05 15:32	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2017-09-05

INSDC accession L

MF289414.1

INSDC accession M

MF289415.1

INSDC accession S

MF289416.1

Host

human

Submission details

Submission ID

MF289414.1.L/MF289415.1.M/MF289416.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-06-05 15:32:39 UTC

Date released

2026-06-05 15:34:50 UTC

Lineage

Segment S Lineage

IV.1

Files

Annotations

LOC_000S633.1.embl

Alignment and QC

Total SNPs L

1644

Total inserted nucs L

202

Total ambiguous nucs L

Length L

12310 (100%)

Total SNPs M

661

Total inserted nucs M

Total ambiguous nucs M

Length M

5375 (99.9%)

Total SNPs S

226

Total inserted nucs S

Total ambiguous nucs S

Length S

1676 (99.6%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

T10C
G23T
A35G
G43T
C48T
T49C
C63G
C64T
T65C
T66C
T68C
G69A
G71C
C85T
G88A
G93A
A109G
C117A

M

T1C
C2A
C82T
C85T
T86C
A107G
A117G
C119T
C120T
T122C
C126T
A128G
G131A
T137C
G143A
A146G
G147A
C153A

S

T1C
C2G
C31T
T48C
A50G
G54A
G67A
C82T
G99A
T106C
A109G
A118G
C166T
G169A
T172C
T175C
C178A
T182C

Deletions

N/A

Insertions

L

ins_0:CTCTTTCCCTR, ins_58:T, ins_11917:CA, ins_12053:CTACAATTTTCTCAGCTATTAATTAACCTTTACTTTTCT, ins_12077:ATGTCC, ins_12108:GACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATAGCTGGCGCTCTCGCAGACCCNGACGCACCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCTTGGGGCCGAAACGATCTC

M

ins_0:TCAA, ins_5366:SRYWY

S

ins_0:YRK, ins_1577:C

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references