This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
Spain/unavailable/2024-09-06
C. S. Casimiro-Soriguer, J. Perez-Florido, J. L. Fernandez-Rueda, I. Pedrosa-Corral, V. Guillot-Sulay, N. Lorusso, L. J. Martinez-Gonzalez, J. M. Navarro-Mari, J. Dopazo, S. Sanbonmatsu-Gamez, E. A. Robles, M. Lara, A. Aguado, M. A. Rodriguez Iglesias, J. A. Lepe, F. Garcia, M. Perez-Alegre, E. Andujar, V. E. Jimenez, L. P. Camino, N. Loruso, U. Ameyugo, I. M. Vazquez, C. M. Lozano & J. A. Chaves

Clinical Bioinformatics Area, Hospital Virgen del Rocio, Avenida Manuel Siurot s/n, 41003

Sample details

Collection date
2024-09-06
Earliest release date
2025-08-01
Sampling location
Spain
Isolate name
unavailable

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-08-01
NCBI update date
2025-10-21
INSDC accession
BioProject accession
BioSample accession
Raw reads accession

Submission details

Submission ID
OZ294990.1
Date submitted
2026-08-24 16:05:47 UTC
Date released
2026-08-24 16:26:43 UTC

Lineage

Lineage
1A

Files


Alignment and QC

Total SNPs
293
Total unknown nucs
4150
Length
10846 (60.7%)
Amino Acid Mutations from founder clade
  • NS2A:L158M
  • NS3:I175V
  • NS4B:I200M
  • NS4B:E249D
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T195A
  • T234C
  • C282T
  • A321G
  • C340T
  • G354A
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • G786A
  • T826C
  • T850C
  • T891C
  • G903A
  • A919C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:L158M

NS2B

  • NS2B:V103A

NS3

  • NS3:I175V
  • NS3:P249T

NS4A

  • NS4A:A85V

NS4B

  • NS4B:I200M
  • NS4B:E249D

env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
Deletions
N/A
Insertions
N/A

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