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LOC_000S633.1
Download
Download FASTA
Download metadata TSV
China/LOC_000S633.1/1968
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1968
Earliest release date
2017-04-02
Sampling location
China
Isolate name
UCCR4459
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484033.1
INSDC accession M
KY484032.1
INSDC accession S
KY484031.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)
Submission details
Submission ID
KY484033.1.L/KY484032.1.M/KY484031.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-24 13:47:39 UTC
Date released
2026-07-24 13:51:21 UTC
Lineage
Segment S Lineage
IV.2
Files
Annotations
LOC_000S633.1.embl
Alignment and QC
Total SNPs S
208
Total inserted nucs S
1
Total deleted nucs S
1
Length S
1672 (100%)
Total SNPs L
1607
Total inserted nucs L
60
Length L
12168 (100%)
Total SNPs M
1045
Total inserted nucs M
1
Length M
5367 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
A
35
G
G
43
C
T
49
C
C
63
G
C
64
T
T
65
C
T
66
C
G
69
A
G
71
T
G
88
A
G
93
A
A
109
G
A
124
G
T
125
C
T
131
A
C
136
T
T
139
C
Show more
M
T
29
C
G
50
T
A
51
G
G
56
A
A
57
C
T
67
C
A
70
G
T
71
A
A
80
G
C
81
T
G
84
T
C
85
T
A
88
G
C
92
T
C
96
T
T
98
C
T
100
C
T
102
C
Show more
S
T
48
C
G
54
A
A
61
G
C
64
T
G
67
A
G
99
A
A
118
G
C
142
T
T
157
C
C
166
T
C
178
A
T
181
C
T
182
C
G
229
A
G
232
A
C
235
T
T
250
A
G
262
A
Show more
Deletions
S
1615
Insertions
L
ins_58:T, ins_11925:GT, ins_12059:TTCTCACAA, ins_12083:GCTATTT, ins_12096:GTTTATATCAGTTTCATTATTTCCAGGGTGTGGGGGGAACG
M
ins_5171:C
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
I
9
V
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
E
19
G
GPC:
T
20
S
GPC:
S
23
L
GPC:
H
24
S
GPC:
E
26
K
GPC:
R
28
Q
GPC:
N
30
S
GPC:
K
31
N
GPC:
D
33
S
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NP
NP:
R
15
K
NP:
D
116
E
NP:
T
124
A
NP:
N
150
H
NP:
H
195
R
NP:
D
199
E
NP:
S
223
L
NP:
I
246
V
NP:
R
270
K
NP:
S
275
N
NP:
S
301
G
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
17
H
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
T
163
V
RdRp:
E
167
G
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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