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LOC_000S5ZB.1
Download
Download FASTA
Download metadata TSV
Nigeria/LOC_000S5ZB.1/1996
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1996
Earliest release date
2017-04-02
Sampling location
Nigeria
Isolate name
IbAr10200
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L segment
KY484034.1
INSDC accession M segment
KY484035.1
INSDC accession S segment
KY484036.1
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma excavatum)
Submission details
Submission ID
KY484034.1.L/KY484035.1.M/KY484036.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-07 12:00:27 UTC
Date released
2026-08-07 12:03:18 UTC
Clade & Lineage
Closest reference L segment
singleReference
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000S5ZB.1.embl
Alignment and QC
Total SNPs S segment
128
Total inserted nucs S segment
16
Total deleted nucs S segment
1
Length S segment
1672 (91.7%)
Total SNPs L segment
17
Total inserted nucs L segment
52
Length L segment
12160 (100%)
Total SNPs M segment
671
Total inserted nucs M segment
4
Length M segment
5366 (98.3%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
C
1495
T
A
1879
G
G
3216
A
C
4117
A
C
5054
A
T
5065
A
C
5100
A
C
5798
T
A
5830
T
T
5875
C
G
8896
A
G
9764
A
A
12099
T
T
12100
C
C
12101
A
G
12105
C
A
12108
C
M segment
G
65
A
T
78
C
T
81
C
C
82
T
G
103
A
G
113
A
T
115
C
T
116
C
C
118
T
T
122
C
G
124
A
A
127
G
C
133
T
A
139
G
G
142
A
A
143
G
A
149
C
C
151
T
Show more
S segment
T
16
A
C
31
G
G
34
A
A
38
G
A
51
G
A
83
G
A
84
G
A
98
T
A
162
C
A
173
G
C
183
T
A
186
G
A
213
G
T
219
C
G
231
A
A
255
G
T
279
C
G
282
A
Show more
Deletions
S segment
1562
Insertions
L segment
ins_12108:TTCATCATCATCGTTATTATCTTGGGGTGTGGGGGGAACGATTTCTTTGAGA
M segment
ins_0:TCTC
S segment
ins_0:TCTCAAAGAAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
9
I
GPC:
F
10
L
GPC:
K
19
E
GPC:
N
21
H
GPC:
P
23
S
GPC:
G
26
E
GPC:
E
28
R
GPC:
N
31
K
GPC:
H
33
D
GPC:
V
34
T
GPC:
D
39
G
GPC:
S
41
N
GPC:
Q
42
P
GPC:
P
44
S
GPC:
P
53
S
GPC:
V
54
I
GPC:
P
56
L
GPC:
S
64
T
Show more
NP
NP:
K
15
R
NP:
Y
20
F
NP:
K
45
R
NP:
A
124
T
NP:
N
125
G
NP:
Q
179
L
NP:
R
195
H
NP:
V
246
I
NP:
G
301
S
NP:
R
428
K
NP:
I
436
V
RdRp
RdRp:
G
1047
E
RdRp:
P
1660
T
RdRp:
T
1675
N
RdRp:
V
3230
I
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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