This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5ZB.1

Armenia/LOC_000S5ZB.1/2023
A. Zhirova, Y. Lisitskaya, A. Volynkina, A. Manucharyan & G. Melik-Andreasyan

Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections

Sample details

Collection date
2023
Earliest release date
2025-03-02
Sampling location
Armenia
Isolate name
345-ARM-TI-2023

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2025-03-02
INSDC accession L segment

Host

Host

Submission details

Submission ID
PQ878920.1.L
Submitting group
Date submitted
2026-09-11 12:57:03 UTC
Date released
2026-09-11 13:01:51 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
41
Length L segment
437 (3.61%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T229C
  • A240C
  • A252G
  • T254A
  • G264A
  • C265T
  • A268G
  • C276T
  • A310G
  • C313T
  • G315A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S19T
  • RdRp:D55A
  • RdRp:H59R
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
Deletions
N/A
Insertions
N/A

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