This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
CCHF (Multi-Ref)
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Enterovirus
Test Dummy Organism
Test organism (with files)
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_000S5ZB.1
Download
Download FASTA
Download metadata TSV
South_Africa/LOC_000S5ZB.1/1987
J. W. Koehler,
K. L. Delp,
B. J. Kearney,
T. A. Conrad,
R. J. Schoepp,
A. R. Garrison,
L. A. Altimura,
C. A. Rossi &
T. D. Minogue
USAMRIID, DSD
Sample details
Collection date
1987
Earliest release date
2017-04-02
Sampling location
South Africa
Isolate name
SPU 115/87
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-02
INSDC accession L
KY484041.1
INSDC accession M
KY484042.1
INSDC accession S
KY484040.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY484041.1.L/KY484042.1.M/KY484040.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-27 14:05:17 UTC
Date released
2026-07-27 14:08:59 UTC
Lineage
Segment S Lineage
III
Files
Annotations
LOC_000S5ZB.1.embl
Alignment and QC
Total SNPs L
895
Total inserted nucs L
62
Total deleted nucs L
1
Length L
12169 (100%)
Total SNPs S
115
Total inserted nucs S
1
Length S
1673 (100%)
Total SNPs M
235
Total deleted nucs M
1
Length M
5365 (100%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
32
A
C
37
T
T
49
C
T
55
C
C
63
G
C
64
T
T
65
C
T
67
G
T
70
C
A
74
G
G
93
A
C
100
T
T
118
C
T
154
C
T
157
C
T
160
C
T
163
C
T
202
C
Show more
M
G
50
A
A
64
G
C
85
T
T
86
C
A
117
G
A
174
G
A
192
G
C
193
T
C
194
T
A
203
T
C
217
T
C
229
A
C
239
T
T
254
C
T
259
C
C
275
T
C
320
T
C
340
T
Show more
S
G
54
A
G
67
A
C
70
T
G
99
A
C
166
T
C
178
A
G
189
A
T
199
C
G
202
A
G
229
A
C
235
T
A
247
G
G
256
A
G
271
A
C
295
T
A
322
G
A
325
G
A
327
G
Show more
Deletions
L
12066
M
5170
Insertions
L
ins_11928:TG, ins_12092:TCTACCATTCATTTCAGTTTCATCATCATTATTATTGTTATTATTTTAGGGTGTGGGGGG
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
R
28
G
GPC:
T
34
V
GPC:
P
42
L
GPC:
P
46
Q
GPC:
L
56
P
GPC:
T
83
I
GPC:
G
85
E
GPC:
P
88
S
GPC:
S
90
P
GPC:
P
97
S
GPC:
V
98
A
GPC:
T
100
A
GPC:
T
102
I
GPC:
L
105
S
GPC:
G
108
S
GPC:
P
112
S
GPC:
T
116
A
Show more
NP
NP:
R
15
K
NP:
R
45
K
NP:
K
91
R
NP:
T
124
A
NP:
G
125
N
NP:
L
179
Q
NP:
H
195
R
NP:
I
246
V
NP:
S
301
G
NP:
K
428
R
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
Y
60
N
RdRp:
R
80
K
RdRp:
T
165
K
RdRp:
A
202
T
RdRp:
N
206
Y
RdRp:
K
492
R
RdRp:
F
495
Y
RdRp:
I
505
T
RdRp:
R
764
K
RdRp:
L
765
P
RdRp:
T
767
A
RdRp:
R
770
K
RdRp:
D
771
E
RdRp:
P
774
L
RdRp:
N
779
S
RdRp:
I
783
T
RdRp:
H
786
Y
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue