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LOC_000S5ZB.1
Download
Download FASTA
Download metadata TSV
India/LOC_000S5ZB.1/2016
P. D. Yadav
National Institute of Virology, Maximum Containment Laboratory
Sample details
Collection date
2016
Earliest release date
2020-03-22
Sampling location
India (Bhuj District, Gujarat State)
Isolate name
NIV164392
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-01 15:12
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2020-03-22
INSDC accession L segment
MH396661.1
INSDC accession M segment
MH396662.1
INSDC accession S segment
MH396663.1
Submission details
Submission ID
MH396661.1.L/MH396662.1.M/MH396663.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-01 15:12:30 UTC
Date released
2026-04-01 15:18:13 UTC
Host
Host
Homo sapiens
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1)
Closest reference S segment
S1 (OL774851.1)
Files
Annotations
LOC_000S5ZB.1.embl
Alignment and QC
Total SNPs S segment
279
Total inserted nucs S segment
7
Total deleted nucs S segment
15
Length S segment
1739 (96.7%)
Total SNPs L segment
1656
Total inserted nucs L segment
79
Length L segment
12182 (100%)
Total SNPs M segment
391
Total inserted nucs M segment
14
Length M segment
5375 (98.2%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
6
G
A
7
C
G
23
T
A
35
G
G
43
T
T
49
C
T
60
C
C
63
G
C
64
T
T
65
C
T
66
C
T
68
C
G
69
A
G
71
C
C
76
T
C
85
T
G
88
A
G
93
A
Show more
M segment
A
1
C
A
2
C
A
3
T
G
65
A
T
78
C
T
96
C
A
100
T
G
106
A
C
111
T
T
116
C
A
127
G
C
133
T
G
134
A
G
145
A
A
149
C
C
155
T
C
160
T
G
166
A
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
T
63
C
A
69
G
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
150
T
T
166
C
A
173
G
G
174
A
G
180
A
Show more
Deletions
S segment
1653-1667
Insertions
L segment
ins_58:T, ins_11931:AT, ins_12054:TACAATTTT, ins_12083:ACTATTC, ins_12108:TTTATTATTTCTGGGGTGTGGGGGGAACGATCTGAAGAGCACACTTATGAACTCAAGTAA
M segment
ins_0:AGACACACACCAT, ins_5166:G
S segment
ins_0:AACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
M
6
I
GPC:
A
8
V
GPC:
F
10
L
GPC:
G
16
S
GPC:
N
21
H
GPC:
P
23
S
GPC:
N
31
K
GPC:
H
33
D
GPC:
D
39
G
GPC:
D
40
N
GPC:
S
41
N
GPC:
P
47
L
GPC:
S
64
T
GPC:
T
65
A
GPC:
P
81
S
GPC:
L
87
F
GPC:
E
91
K
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
K
354
R
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
A
14
D
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
K
91
T
RdRp:
I
114
V
RdRp:
A
122
T
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
I
223
V
RdRp:
A
263
S
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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