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LOC_000S5ZB.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_000S5ZB.1/2004-05-19
M. Zivcec,
L. Guerrero,
C. Albarino &
C. Spiropoulou
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Sample details
Collection date
2004-05-19
Earliest release date
2017-04-01
Sampling location
Turkey
Isolate name
Turkey_812955
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2017-04-01
INSDC accession L
KY362515.1
INSDC accession M
KY362519.1
INSDC accession S
KY362517.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
KY362515.1.L/KY362519.1.M/KY362517.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-31 13:40:29 UTC
Date released
2026-07-31 13:45:01 UTC
Lineage
Segment S Lineage
V
Files
Annotations
LOC_000S5ZB.1.embl
Alignment and QC
Total SNPs M
1027
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5203 (97%)
Total SNPs L
1282
Total inserted nucs L
33
Length L
12052 (99.3%)
Total SNPs S
253
Total inserted nucs S
1
Length S
1657 (99%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
A
91
G
G
93
A
C
100
T
A
109
G
T
131
A
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
T
229
C
A
240
C
T
253
C
T
254
A
G
264
A
C
265
T
A
268
G
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
G
84
A
C
92
T
T
94
C
T
100
C
T
102
C
C
103
T
A
108
G
A
112
G
T
113
C
Show more
S
T
49
C
A
50
T
G
54
A
T
79
C
A
81
G
G
99
A
G
100
A
A
109
G
C
115
T
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
Show more
Deletions
M
327-329
Insertions
L
ins_11928:CG, ins_12085:TT, ins_12108:TTATTTGAAGGGTGTGGGGGGAACGATTT
M
ins_5175:A
S
ins_1577:A
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
R
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
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RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
A
202
V
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
G
449
D
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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