This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000S5ZB.1

Turkey/LOC_000S5ZB.1/2004
M. Zivcec, L. Guerrero, C. Albarino, C. Spiropoulou, P. E. Rollin, T. G. Ksiazek & S. T. Nichol

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2004
Earliest release date
2017-09-06
Sampling location
Turkey
Isolate name
Tur_2004_813147_M

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-11 10:17insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-09-06
INSDC accession M

Host

Host

Submission details

Submission ID
MF511231.1.M
Submitting group
Date submitted
2026-05-11 10:16:59 UTC
Date released
2026-05-11 10:23:26 UTC

Files

Annotations

Alignment and QC

Total SNPs M
1018
Total inserted nucs M
1
Total deleted nucs M
3
Total ambiguous nucs M
57
Length M
5354 (98.8%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T40A
  • G50A
  • A51G
  • T67C
  • T68C
  • A69G
  • T71A
  • G76C
  • A80G
  • T83C
  • G84A
  • T86C
  • C92T
  • T100C
  • T102C
  • C103T
  • A108G
  • G110A
Deletions

M

321-323
Insertions

M

ins_5171:T

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16C
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24L
  • GPC:E26T
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:T34N
  • GPC:M35T
Deletions

GPC

GPC:77
Insertions
N/A

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