This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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LOC_000RAUJ.1
Download FASTA
Display Name: North_Macedonia/LOC_000RAUJ.1/2024-01-01
D. Jakimovski,
P. Banovic,
B. Zana,
A. Abraham,
Z. Lanszki,
T. Gorfol,
Z. Tauber,
A. Kuczmog,
K. Banyai,
G. Kemenesi
Submission details
Submission ID
PQ031238.1.L/PQ031239.1.M/PQ031240.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:23:46 UTC
Date released
2024-09-19 17:26:28 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
University of Pecs, Szentagothai Research Center
Alignment states and QC metrics L
Completeness L
45.04%
Length L
10540
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
593
Total unknown nucs L
5087
Alignment states and QC metrics M
Completeness M
84.25%
Length M
4974
Total ambiguous nucs M
0
Total deleted nucs M
9
Total frame shifts M
0
Total inserted nucs M
6
Total SNPs M
841
Total unknown nucs M
456
Alignment states and QC metrics S
Completeness S
78.11%
Length S
1306
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
181
Total unknown nucs S
0
Sample details
Collection country
North Macedonia
Collection date
2024-01-01
Isolate name
Arachinovo/North Macedonia-1/2024
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
PQ031238.1
INSDC accession M
PQ031239.1
INSDC accession S
PQ031240.1
NCBI release date
2024-07-24
Nucleotide mutations
Substitutions
L
L:
C
805
T
L:
T
814
C
L:
A
817
G
L:
G
823
A
L:
T
826
C
L:
C
835
T
L:
T
845
C
L:
A
847
G
L:
T
853
C
L:
G
880
A
L:
A
892
C
L:
A
900
G
L:
C
904
T
L:
A
911
G
L:
T
929
C
L:
G
931
A
L:
T
937
C
L:
C
941
T
Show more
M
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
C
74
T
M:
G
76
C
M:
A
80
G
M:
T
83
C
M:
G
84
A
M:
T
86
C
M:
C
92
T
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
M:
A
112
G
Show more
S
S:
T
49
C
S:
A
50
T
S:
G
54
A
S:
T
79
C
S:
A
81
G
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
C
115
T
S:
A
121
G
S:
G
134
A
S:
C
142
T
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
G
171
A
S:
T
175
A
S:
C
178
A
Show more
Deletions
M:165-167, M:318-323
Insertions
ins_M:335:ACA, ins_M:158:CAG
Amino acid mutations
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
GPC:
T
37
A
GPC:
D
40
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
G
185
S
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
Show more
RdRp
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
S
427
N
RdRp:
G
449
D
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
K
522
R
RdRp:
A
719
V
RdRp:
R
764
K
RdRp:
K
769
E
RdRp:
R
770
K
RdRp:
D
771
E
RdRp:
P
774
L
RdRp:
E
776
G
RdRp:
I
783
A
RdRp:
T
784
V
Show more
Deletions
GPC:77, GPC:113-119, GPC:123, GPC:124
Insertions
ins_GPC:103:NMNS, ins_GPC:100:ATSTS
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