This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000R78U.1

Display Name: Turkey/LOC_000R78U.1/2021-01-01
A.T. Kalaycioglu, T.C. Oguzoglu, O. Ari, A. Engin, M. Bakir, R. Durmaz

Submission details

Submission ID
OQ935543.1.M
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:23:46 UTC
Date released
2024-09-19 17:25:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:23insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics M

Completeness M
17.05%
Frame shifts M
GPC:518-1685(nt:1643-5147)
Length M
880
Total ambiguous nucs M
0
Total deleted nucs M
35
Total frame shifts M
1
Total inserted nucs M
0
Total SNPs M
144
Total unknown nucs M
0

Sample details

Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C26M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
OQ935543.1
NCBI release date
2023-08-15

Nucleotide mutations

Substitutions

M

  • M:T1644C
  • M:G1646A
  • M:T1649G
  • M:A1652C
  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:T1706A
  • M:C1715T
  • M:C1718T
  • M:G1720A
  • M:C1721T
  • M:C1724T
  • M:G1739A
    • Deletions
    M:1608-1642
    Insertions
    None

    Amino acid mutations

    Substitutions
    Deletions
    GPC:506-517
    Insertions
    None