This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000R5L5.1

Display Name: Turkey/LOC_000R5L5.1/2021-01-01
S. Zarrabi Ahrabi, G. Akyildiz, A. Gargili Keles

Submission details

Submission ID
OQ377560.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:23:46 UTC
Date released
2024-09-19 17:25:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:23insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Marmara University, Faculty of Health Sciences/Basic Health Sciences Department

Alignment states and QC metrics S

Completeness S
12.80%
Length S
214
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
42
Total unknown nucs S
0

Sample details

Collection subdivision level 1
Istanbul
Collection country
Turkey
Collection date
2021-01-01
Isolate name
SZAMU-36

Host

Host name scientific
Haemaphysalis
Host taxon id
34622

INSDC

INSDC accession S
OQ377560.1
NCBI release date
2023-06-27

Nucleotide mutations

Substitutions

S

  • S:G259T
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
  • S:A322G
  • S:A325G
  • S:G328A
  • S:A337G
  • S:A349G
  • S:G353T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:A130V
  • NP:F139L
    • Deletions
    None
    Insertions
    None