This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
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Loculus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Ebola Zaire
Test organism (without alignment)
West Nile Virus
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Status
LOC_000R4JA.1
Download FASTA
Display Name: Turkey/LOC_000R4JA.1/2021-01-01
A.T. Kalaycioglu,
T.C. Oguzoglu,
O. Ari,
R. Durmaz,
A. Engin,
M. Bakir,
E. Erdem
Submission details
Submission ID
ON755121.1.M
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:23:46 UTC
Date released
2024-09-19 17:25:57 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-09-19 17:23
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Karadeniz Technical University, Faculty of Pharmacy, Department of Pharmaceutical Microbiology
Alignment states and QC metrics M
Completeness M
100.00%
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
28
Total frame shifts M
0
Total inserted nucs M
26
Total SNPs M
1018
Total unknown nucs M
0
Sample details
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C22M-2021
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession M
ON755121.1
NCBI release date
2023-03-14
Nucleotide mutations
Substitutions
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
G
84
A
M:
T
86
C
M:
A
88
G
M:
C
92
T
M:
T
94
C
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
Show more
Deletions
M:165-167, M:327-329, M:593-595, M:5172, M:5173, M:5180, M:5181, M:5187-5191, M:5238, M:5246-5250, M:5277-5280
Insertions
ins_M:599:ATA, ins_M:5286:TGAG, ins_M:158:CAG, ins_M:5231:TTACAG, ins_M:5202:CTT, ins_M:5194:CGTCTAG
Amino acid mutations
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
R
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
Show more
Deletions
GPC:90
Insertions
None
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