This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000R4DM.1

Display Name: Turkey/LOC_000R4DM.1/2021-01-01
A.T. Kalaycioglu, T.C. Oguzoglu, O. Ari, R. Durmaz, A. Engin, M. Bakir, E. Erdem, T. Dal

Submission details

Submission ID
ON640909.1.L
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-19 17:23:46 UTC
Date released
2024-09-19 17:25:57 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-09-19 17:23insdc_ingest_userOPEN
Data use terms URL
https://#TODO-MVP/open

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics L

Completeness L
69.62%
Length L
8430
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
872
Total unknown nucs L
0

Sample details

Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C21F-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
ON640909.1
NCBI release date
2023-02-21

Nucleotide mutations

Substitutions

L

  • L:T3505C
  • L:G3523A
  • L:T3529C
  • L:G3568A
  • L:C3571T
  • L:C3572T
  • L:A3583G
  • L:C3586T
  • L:T3589G
  • L:C3595T
  • L:T3607C
  • L:G3628A
  • L:A3630G
  • L:T3646C
  • L:G3652A
  • L:G3676A
  • L:A3679G
  • L:A3685T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    RdRp

  • RdRp:D1171E
  • RdRp:K1185R
  • RdRp:R1212K
  • RdRp:V1228I
  • RdRp:K1282M
  • RdRp:V1317I
  • RdRp:I1363V
  • RdRp:N1367D
  • RdRp:L1386I
  • RdRp:S1436N
  • RdRp:S1454A
  • RdRp:R1456K
  • RdRp:I1458L
  • RdRp:R1478K
  • RdRp:V1495I
  • RdRp:V1577I
  • RdRp:V1601I
  • RdRp:K1656R
    • Deletions
    None
    Insertions
    None