This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q42B.1

USA/LOC_000Q42B.1
L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, T. Myers, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
IbAr10200

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
INSDC accession M
BioProject accession
BioSample accession
Raw reads accession

Submission details

Submission ID
OK573221.1.M
Submitting group
Date submitted
2026-07-08 18:27:05 UTC
Date released
2026-07-08 18:32:42 UTC

Files

Annotations

Alignment and QC

Total SNPs M
142
Total inserted nucs M
75
Total deleted nucs M
43
Total frame shifts M
1
Frame shifts M
GPC:209-1685(nt:717-5147)
Length M
781 (14%)
Stop codons M
GPC:173
Total stop codons M
1

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • T1C
  • A9T
  • A10T
  • T12A
  • A13C
  • C14A
  • T15C
  • G17T
  • C18A
  • G19C
  • C21T
  • G24T
  • T25G
  • C26A
  • A27C
  • A30G
  • G32C
  • T33G
Deletions

M

674-716
Insertions

M

ins_0:TGATATATGCATGATGTTAGCAGGTATGCTGCAATTAAGATGCTCAATCCACTT, ins_593:CATGCCTGTATCTTTGGATTT

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

GPC

  • GPC:P139H
  • GPC:Q140S
  • GPC:D141N
  • GPC:H143K
  • GPC:H144S
  • GPC:P145D
  • GPC:V146L
  • GPC:R147Q
  • GPC:N148I
  • GPC:L150S
  • GPC:V152N
  • GPC:T153I
  • GPC:S154T
  • GPC:P155D
  • GPC:G156W
  • GPC:P157S
  • GPC:D158A
  • GPC:E159T
Deletions

GPC

GPC:195-208
Insertions

GPC

ins_GPC:170:IFGFNEAFSEEIFTSI

Report an issue with this sequence or metadata

Create GitHub issue