This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q42B.1

South_Africa/LOC_000Q42B.1/1988
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
1988
Earliest release date
2008-12-30
Sampling location
South Africa
Isolate name
SPU 45/88

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L segment
INSDC accession S segment

Host

Host

Submission details

Submission ID
FJ435367.1.L/FJ435422.1.S
Submitting group
Date submitted
2026-09-04 15:29:37 UTC
Date released
2026-09-04 15:31:04 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)
Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
64
Length L segment
754 (6.23%)
Total SNPs S segment
17
Length S segment
436 (24.1%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • G2173A
  • T2182C
  • A2185G
  • C2200T
  • A2209G
  • G2233A
  • A2245G
  • G2251A
  • A2254G
  • A2260G
  • A2263G
  • C2287T
  • G2311A
  • A2338T
  • C2341T
  • T2347C
  • C2353T
  • A2362T

S segment

  • G246A
  • G282A
  • A309G
  • A311G
  • G330A
  • T387C
  • A393G
  • A405G
  • C411T
  • A441G
  • G444A
  • A528G
  • C562A
  • A570G
  • A576G
  • C604G
  • C605G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K91R

RdRp

  • RdRp:E754D
  • RdRp:L765P
  • RdRp:T767A
  • RdRp:P774L
  • RdRp:N779S
  • RdRp:I783T
  • RdRp:H786Y
  • RdRp:S788G
  • RdRp:K809R
  • RdRp:G812E
  • RdRp:T876S
Deletions
N/A
Insertions
N/A

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