This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q42B.1

Pakistan/LOC_000Q42B.1/2019
M. Umair, Z. Rehman, S. Whitmer, M. Mobley, A. Fahim, A. Ikram, M. Salman, J. M. Montgomery, J. D. Klena, A. Khurshid, E. Talundzic, J. Montgomery & J. Klena

CDC, NCEZID-VSPB

Sample details

Collection date
2019
Earliest release date
2024-07-26
Sampling location
Pakistan
Isolate name
202000287_922019|Pakistan|2019

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-07 17:09insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-07-26
INSDC accession S segment

Host

Host

Submission details

Submission ID
OM162075.1.S
Submitting group
Date submitted
2026-06-07 17:09:06 UTC
Date released
2026-06-07 17:13:59 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
211
Total inserted nucs S segment
14
Length S segment
1557 (85.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • T16A
  • C31G
  • A51G
  • G60A
  • T63C
  • A69G
  • T72C
  • G75A
  • A83G
  • A84G
  • T90C
  • A93G
  • A98T
  • A102G
  • A105G
  • C126A
  • T128A
  • C129T
Deletions
N/A
Insertions

S segment

ins_0:TCAAAGAAACACGT

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:K15R
  • NP:Y20F
  • NP:F30Y
  • NP:S39N
  • NP:K45R
  • NP:V83A
  • NP:D116E
  • NP:A124S
  • NP:Q179L
  • NP:D199E
  • NP:A307V
  • NP:P321S
  • NP:E322D
  • NP:Q405L
  • NP:E421D
  • NP:R428K
Deletions
N/A
Insertions
N/A

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