This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3XM.1

USA/LOC_000Q3XM.1
M. Rios, R. Fares-Gusmao, E. Volkova, A. Grinev, F. Assis, C. Chancey, S. Ok, B. Rocha, E. Sippert, L. Tallon, L. Sadzewicz, K. Vavikolanu, A. Mehta, J. Aluvathingal, S. Nadendla, Y. Yan & H. Sichtig

US Food and Drug Administration, Center for Devices and Radiological Health

Sample details

Earliest release date
2022-07-30
Sampling location
USA (MD)
Isolate name
BSL15-13

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-21 14:54insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-07-30
NCBI update date
2022-07-30
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host

Submission details

Submission ID
OK573260.1
Submitting group
Date submitted
2026-02-21 14:54:02 UTC
Date released
2026-02-21 15:15:14 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
20
Total inserted nucs
7648
Total deleted nucs
2
Length
7837 (1.73%)

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T3C
  • G5A
  • C8G
  • T16A
  • T21C
  • G22A
  • A26C
  • C28A
  • T29A
  • A31C
  • G35T
  • T38G
  • G43C
  • A47C
  • T49C
  • A61G
  • C64T
  • G66T
  • T77G
  • G191A
    • Deletions

    9, 10
    Insertions

    ins_0:GTCTTTCTTTCCAAACCTCTCCCAAGGTGCGTCCTTTTGCCCCACCTCTTTTTAGTCCTGGTTTTTCCATGTTCTTTATGAGTGTCCATGTCATGGATAGACATGACAACCAACCCCCACGCATAATGTGGCAGAGTCCGATGGCAGTTGTTGCGTTCCAAACAGAGCTTGCTCCATTCTCCCAAAGCGTCACCGCTGCAGCCGTGATCAAAATTCCGGCTTCTCGTACTGTCTTCACAGACGGGTTCACTACTACTGCAGCTAGAGACACCAAGATCAGCATGATCTGTCCAACTTTCTTCTGCATAATGGGTGTGGTGCGCTCTAATTCGGGGACGTCCGTGGCCACGATGCCATCCACTACAGCGTTCTTCATGATTCCGGCCGCTGTCCGCCGCTGGGCTGAGCGCATTGCCTCAGCTTGCCAACCGGGAACCATGTAGGCATAGTGGCAAAAAAGGAGTGTTGCCGCTGTTACCGTAACGGTGAGGGTGACTTGTCCCCAGCATCCGGCTGCTAGCAGGAGAGCCGACACTCCAACATCGACGAAGGGGAAGCCTCGCGCGAGTGTGAATAGTGCACTTGCCTGAACGTTTATTGAGGTCAATGAGGTGTTGATGTAATCTGACGTGATCAAATGCTTTAGCAGTGGAGTGAGGACCGCTGTTGTCACAGCGTACAGTGACCAGGCTGTTGCCGGCCTCAAGTCCAGAAGAAACTCTCCCATGCTAAAATTCTCCTTGACCTCAATTCTTTGCCCAAACAAACTGCTTATGTCACTCTTGGTCTTATCTAGCCAACCCATCTCGTTGGCTGCCACTGCGCTCACAAGGGTCATGACACAAATCAAGAACACGGCTAGCTGGTTGTCTGTCTGCGAACGTTGCTTCTCTGGCTCAGGAATTAGCACAATCATCAAGAGAAGGGAGAGCAGCAACATTCCGGCGATCTTCGTTCCTGGAACTTCAGCCATCCAGCAGAAAAAGGTCGCGACTCCCAAGACAGCGCCTCCCAAACCTATCTTTCCAATGCCCTTCCGCTGCATGAGGAGAAAGAATACTCCCATGGTCATCACACTCAATAAGGCGATCAAGGCAATTGTCTGAAGGGCATCTGGCAGTTCCTCCAGGGCCATTCTGTGAGCTCTTCCTCCTTTCTCTGCAGTGGCCACAACGTACATGGTGTCGAGTGCTTCCCATGTCTTCCCCATGAAGTGCTCAGGCATCTTTCCCAGAACCTCAATGAGCCCTATCTGAGAACGTTTTCCCGAGGCGAAGTCCTTGAACGCCTTTAGTGCCTGATGATCCGAGTACACCCTGGCGTCAATCCAGCGCGGCCTCAGAATCTTCCTTTCACCAAGCTTCGTGATGACTTCCACTTCGTTGTTGTCTTCTAAAATTGTGTTTGTCCTAGGGCCATCAAAGCACCACCTCCGGTCGTGGTATGACACTCCAGCCGCTGCAACCTTGTAAGCCAGCCAAACTGGCAGATCTGCAGTCCTCAACAGTTCCAGAAAGTTTTTTCTCTCTTCTCCTCTGAGCCGGTATTCCCCATCCATGGTGTATACCTTCTCACGCTCTGGTTGGTAAAATTGAGCGATCAGTCCGTTTGGCATGTTGATGTTGTCCAGCATGATTCGTGCCTCAGTCCAATGGGCGAAGTTAGAGTCGTCTTCATTCGTGTGCCCCCCATAACAGTACTCATCACCAACTTGCGACGGATTTCTACCGATACGTCCACGTCTCTGGGCGGCACTAGCTGCTGTAACTGCAGATGGTTCTCCCAGGATCACTCTCCCTTCTCCTTCTGTTATGATGGTTGGTTTCACACTCTTCCGACTGTCAATCACCCTGCTCGCCTTGAAGTTAGCCCCCATTTCAGATATGTCTGTTGTGATAACAAAGTCCCAATCATCGTTCTTACATTTTGGGTACTCCGTCTCGTACGACTTTCTGTTCAATTGGACTACTTTCTTTCCAGCACGTTGTAGGCAAAGGGCAATCTCATTCCCCATCTTGACACTAGGCACAAACCAAACCGTCTTCCCGGTGTATTCTGTGATCCATTCGTATCCAGAGTTCCAAGCTCGATCCGGGATCTCAGTCTGTAAGTCGGAAATTGGTGAATTGGACTCTGGGAATGGATCTGAAGTGCCTGGTGGGGTGGCTGTCATGAATATTGCCGCCGCCTCCCCTAACTCGACCTTTGTGGAAATGTAACCTCTTGCTGCAATGCTAGCTGGGTCGGTGAAATGAGCCTCATCCATCACAAACAGGTTGTAGTTCGGCACCCTGTGAGGAGACATCAGCCTGTGGGTGAGGGTAGCGTGACACATGACATCAACAATCTCATTTCCATTATGTTCTCTGGGCACAGCGGATGTCTGGTACCGGATGGGCAGTCCTCTCAGTGCTTCAGCCATCTCAGCAGCCACAACCCTGGTTGGTGCTAGCACGGCTGTTCTCAGTCTTCTGTTTATGGCCTCTTTGATGATCTGTGGCAGAATCCTCCTTGTTTTACCGGCGCCGGGATGGAGATCCAGTACAGTGATCTGTTTTTTCCTCAGCATCTCAGGTTCGAATCCGGCTGGGATTGGCTCATCCATCCTTTCACCCTGCACTATCGCGCTTATGTATGAGCCGTTGGGCATTATGACTCCATTGCCATAAAGCCCAATCACATCACCGTTTTTGTCCACTATTGGTGAGCCTGATGTTCCAGTGGGGAAGTCCAAAGTCACGGCCCCGATTTCTCCTTCAGGTGTTTTGAACACCCCTGGTTTCGTCTGGACGTTCTTAACGTTCTTGCCAGGTTCCACCACAATCATCTGCACCTCATCCTGCCCGTTCCACTTGTGCTGCAATTTCCAGGGTCCTCCGTAACAAAGTCGATCCTCCTTGACACTGCCCCAGTATGGGTCCAGACGGCCCTCTCCGCTCATCAAAGCGGCTCCTTTTGTTGTATGCCAAAGGGTGTGAAAAACACCTTCAACCATCACGCCCGCTCCTGCTTGATAACTGCCGAGCAGCCCACGAGTCATGATCCTGTAGACGCCGGTGGTCGTGTCCCCCTTTTTGTACTCCTTTGGTGAGGGAGTGTCCCACAACACGCCTCCTCTCTTTGTGTATTGGAGAGTTATCCAAAATCCAACTACTGAGGGCAAGATTGCCCAGGGGGTGTACGCACTAATCGCGAGGCAGACCATTCTGAGCATCCATATCTTCCAAGGTGCTCCTGGATCATTCATGAGCTGGAAGTTTCCATCATCATCAAGCCGCACATCAACTCTTTCGCTCGAGCCTGTAATTTCTGCATCACTTTCCCAGGAAATGTCCGCCGTTCTCTCAATCCACATATCTGTTGATTTCCCAGAAATCACGAAAGCAGCAAACATGAGCCCCGCGATAGTCATTGGAATGGCCATGGAGTCAATGTCAAGCTCTGCCAGCCCTCCGACGATGGCAAACATTAGGCCGACAGCTGTCATCACTTCAGTTGCGGGCCATCCGCGTTTACGGTTGGGATCACATGCAATCAGTCCAGCAGCAAGGATCATGGGGTTGAAAAGTCCTGTTGAGGCCAGAGCCAAGCATAGCAGACTTGCTCCTTTCTTTTTTGCAGCTGCACTCCTCTTCTCCTTGATCAAGCTGCCTATTCCGACCATCAACAGCAGTATCCTGTACACATCCAGATTCAAGCATCTCAGCCCGGGTGTTAGCAGGGCTAGCAGCGGAACAACCACGTTTGATGTCGTTGTAAATGTTATGGCTCTCAGTATCATCCAAGCTACCGCCAGTGAATTCAACACATCAGGAATCTCCCAGAGCAGAATTTGGCGGGCATCGTGATAAGCCATTTGAAAGAAAACAGCCGCCAACATCAACAAAATGTTCTCCTGGTTGGTCCATCTCGCTTTGAGAAACGATGCCACCATAAACACTGGTTGTATCTTGAAGGTCGCCATGAGCGCCAAGTGTACCACGTCTCCTCCCGAATTAGATTCTGCGAAAGCTGCCCCCACCAAGATGATATAGCGTAACACATCAGTGTAAGTAATGCCCCCAAACACCAGGACTAGCAGAGCAATCAGTATAGCTGGCATGCTGATCTTGGCTGTCCACCTCTTGCGAAGGACCTCCTGGGTGGCCAAGAACACGACCAGAAGGCCCAACTGAAAAGGGTCAATCATATCAGCATTGTAAGCATTCACTTGTGACTGCACGAGAGTCTTTTCATCATGTCTCTGTGGTCTGATCTCCATACCATACCAACAGCCGCTGTCAGTTTGGTAGCGCAGTGGTGGTAAGGTGCAGCTCCTGCAGCACCAATCTGTTATCAACTTTCCGCTCTCTGTGGTGGTGCGAGTGGCAGGTCCACGGTGTCCGCAGCTCTCACTCAGGGTGACCGTAGTTCCTGGGCAGTAATCGAAGTCAATCTCTACCCGGCCTTCGTCCCATGGGCCCTGGTTTTGTGTCTTGTACCCAGGTCTCCGATTGTGATTGCTTCGTGGTCCCGCCAGTGTGACTGGTATTATCAAGTCACTCTCAAGGATTCCATCGCCCCACAAGGTATGCGTCTCAGGCCACGTACATGATTTGACTTCACCCAGAACTGCCCTTTCAAGCTTCCACGTATCATTGAGCCTGCTTTCAATCCAATAGGACAGGTCACTGTGGATCGCCAAGTTGTTCTTGACAGCCGTTCCAATGATCTTCGAGTCACATTCAGTTGTGTTGCTCTCTCTGACCTTCAGGAACATCCGAGTGCTGGTGAGACCAAATCCAAAATCCTCCACTTCTAAGCTATTCCAAGCGCGATTCTGAGTCGGACATTCCTTGGTCTCCGGACCATCAACCACAAAGGTGTTGTTGGCGAGTTCTGGTGCAAATAAAATACTCTTTCCCCAGGCCTTCCAGCCAATTTCCAATTTTTCCGTGGTGGCGGTGAGGCGTTTAGGTGCTGACTTGTACATTCCCTCCTGTTTCTCAACCACGACACTAAGGTCCACACCATTCTCCTTCAAAAGAGTGTTCAGCTCGTCCTTCACTGCTTCCCACATTTGATGCTCCAGTCTGGAAACTGATCGTAGACCGCACACTCCTTCCTTATGAGCTTTCTGAATGATCTTGGCTAGGCCTTGTGGCGTTTCAGGGTAATACTTGTACCGGTCCATCCAAGCCTCCACATCATTGTGTATGAACACTCCACTTCCACATCTCAGCTCTTGCCGGCTGATGTCTATGGCACACCCGGTGTCAGCATGCACGTTCACGGAGAGGAAGAGCAGAACTCCTCCAACTGCGAGAAACGTGAGAGCTATGGACCTATCACGAGCATTGATGCCCATCCACAACAGGAGAGCCCCCAGCAATCCTTGCGTTATCCAGGACATGCCTCCGAACAGTGAGCGGAATGCTCCTCCAAACACTTGATGGACAGCCTTCCCAACTGAGGTGAACACCCCTCCAACTGATCCAAAGTCCCAAGCTGTGTCTCCTAGAGCAGCTAGTCTCTGCGCTCCTTTGAGGGTGGTTGTAAAGGCTTTGCCAATGCTGCTTCCAGACTTGTGCCAATGGTGATTGATCTGTTGTTCTCCTCTGCCCACCACTATGTATGAATCTCCAAAGGGTGGTTCCAATTCAATCAGGACCTTAGCGTCGGCCGTGGCCACTGAAACAAAAGGGTTGACAGTGACCAATCTGCCCACTGGCGTTAGGTCGTTCAATGAAGCCACTGACGAGATAGGAACTTTGCAAGGTCCATCCGTGCCAGTGTACTGCAATTCCAACACCACAGTGCCGTGACCTGTGTCTGCGGGAGTCCCAAGAAACTTGAAAGCCTTTGAACAGACACCATAGGTTGTTCCCTTCAACTGCAATTTTTCCATCTTCACTCTACACTTCAAATGACCCGACGTCAACTTGACAGTGTTGCTTGAAAATTCCACAGGAATGGCTCCAGCCAAAGCTTGATGCAAAGCTCCCTCTTGTGAGCCCAATGCTATCACAGACTGCTTCGTGGCGTGTGGTTCCTCAAACTCCATTAACGTCTCTCTGTTCCTCCATACAGTACTTCCAGCACTGCTCCAAGGGAGGTTGAGGTCCATGAACCACTCACGATGGACCAAGAACGTCTTTGTTCCAACAGTCATCACGTAGTATGCATTGGTGTCAATCCCTGACCGTGGTTCACAGTCCACTGTCACCTCTCCATATTCTCCAAGCTTTAGTGTGTATGAAGGCGCCGCAGGAGTGATGCTGAATCTCCCTGCCTGAGTGGCTCCAGCCTGTGTGGAGTAGTTTCCGTGCGACTCCACAGTAGTTGGTCCATGGACAAAAATGGCCACTTCGTACTTGATATTCTCTTTCAAGATGGTTCTTCCTATTGCCTTGGTAGAGCAGGCAAATTTGGCGCATGTGTCAATGCTTCCTTTGCCAAATAGTCCGCAGCCGTTGCCCCAGCCCCTGTCCACCACTCCTTGTCTGCACACAAAAGCTGGGTCAGCACGTTTGTCATTGTGAGCTTCTCCCATGGTCGGGCACGCAGCTTTGGTGGAGAGATCGCTGACGGTAGCCAAATAGCAATAACTGCGGACCTCTGCCAGGTTGGCCGCCTCCATATTCATCATCTTCACATCGATGGTAGGCTTGTCCTTAGACATGATAGTCACGCAGCTGTCGCCTTCGAGAACCAAATCCACCCATGTTGCTCCAGACACTCCTTCCAAGAAGTCTCTGTTGCTCATTCCAAGGCAGTTGAAGCTGTAAGCTGGGGCCACCAAAAGCAATAGCACGACAAACACAACTCTCTGCATGGTGTTGCTCCCAAGCATCCAACCAATGACGGCTGCCACCAGGGCATATCCAGGGTTCCTCAAGATCCATGATTCTGTTTTTACCAAATACCTTGTGGCCTTGGTGCTGTCCATCCAAGCCCCCTTCTTGTTCGCTAGAGTGCTTTCTCCGTGCGTCTGCACTGTCAGTGACCTCCGACTGCGTCTTGAGTGGCGTGTCTTGGTGCATCTTCCATACCTGACGTAGACTGCTGACTTTGTGCACCAACAGTCGATGTCTTCTGGATCATTACCAGCCGACAGCACTGGGCATTCATAAGTGATAGTGTCATCGCACATGTATCCCACATCCATTGCTCTGACAATGCATAGGTTCTTTCCAGCAGCTGTTGGAATCGTGATGACATCTGTGACGTCAGTAGCATTTACCGTCATCATCACCTTCCCTTGGAAGTTAGAGAGGGTAACTGCTCCTACGCTGGCGATCAGGCCAATCATAACTGCAATTCCGGTCTTTCCTCCTCTTTTCTTTTGTTTTGAGCTCCGCCGATTGATAGCACTGGTCAAGGTCCCTAGTTCCTTCTTAAAACTCAAAAGGTGTTTCATCGCTGTTTGTTTGTTCACACCTCTCCATCGATCCAGCACTGCTCGGGTCGG, ins_16:ACCTGAAGAACGCCAAGA, ins_38:CCCC, ins_41:CCGTCGA, ins_53:TAGCCCTCTTCAGTCCAATCAAGG, ins_57:CACGCGGGGCATTCCGCGTT, ins_68:ACAGCCCGGCTCTTGCCGGGCCCTCCTGGTTTCTTAGACAT, ins_72:ATCTTCGTGCTAAGAAACAGCTCGCA, ins_78:TAATTGTTGTTAATCCTCACAAACACTACTAAGTTTGTCAGTTCACACAGGCGAACTA

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    N/A
    Deletions
    N/A
    Insertions
    N/A

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