This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q3RZ.1

USA/LOC_000Q3RZ.1/2011-07-08
N. Grubaugh, Y. Fang, N. L. Matteson, K. Gangavarapu, L. Coffey, C. Barker & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2011-07-08
Earliest release date
2019-01-20
Sampling location
USA (Shafter,California)
Isolate name
WNV/mosquito/Shafter_CA_USA/2011-07-08/W429

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2019-01-20
NCBI update date
2019-01-20
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MH508016.1
Submitting group
Date submitted
2026-11-05 10:26:43 UTC
Date released
2026-11-05 10:40:08 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
66
Length
10302 (93.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • 2K:S19G
  • NS2B:A103V
  • NS3:I162M
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S15R
  • NS5:K177R
  • env:K93R
  • env:T126I
  • env:I159A
  • prM:V10M
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T477C
  • G493A
  • A630G
  • C660T
  • T891G
  • T945C
  • C1260T
  • T1442C
  • C1465T
  • G1575A
  • C1635T
  • C2466T
  • C3300T
  • C3570T
  • C4107T
  • C4129T
  • A4146G
  • C4272T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

2K

  • 2K:S19G

NS3

  • NS3:I162M

NS4B

  • NS4B:S15R

env

  • env:V159A
  • env:L167F

prM

  • prM:V10M
Deletions
N/A
Insertions
N/A

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